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ORCIDDiscrete and Topological Models in Molecular Biology 2014
- Natasa Jonoska, Masahico Saito:
Discrete and Topological Models in Molecular Biology. Natural Computing Series, Springer 2014, ISBN 978-3-642-40192-3
Discrete and Graph-Theoretic Models for Data Analysis
- Giuditta Franco
:
Perspectives in Computational Genome Analysis. 3-22 - Angela Angeleska, Sabrina Kleessen, Zoran Nikoloski:
The Sequence Reconstruction Problem. 23-43 - Alessandra Carbone:
Extracting Coevolving Characters from a Tree of Species. 45-65 - Paola Bonizzoni, Anna Paola Carrieri, Gianluca Della Vedova, Riccardo Dondi, Teresa M. Przytycka:
When and How the Perfect Phylogeny Model Explains Evolution. 67-83 - Mark Daley:
An Invitation to the Study of Brain Networks, with Some Statistical Analysis of Thresholding Techniques. 85-107 - Vidit Nanda, Radmila Sazdanovic:
Simplicial Models and Topological Inference in Biological Systems. 109-141
Molecular Arrangements and Structures
- Christine E. Heitsch, Svetlana Poznanovic:
Combinatorial Insights into RNA Secondary Structure. 145-166 - Naomi Fox, Ileana Streinu:
Redundant and Critical Noncovalent Interactions in Protein Rigid Cluster Analysis. 167-196 - Meera Sitharam:
Modeling Autonomous Supramolecular Assembly. 197-216 - Paolo Cermelli, Giuliana Indelicato, Reidun Twarock:
The Role of Symmetry in Conformational Changes of Viral Capsids: A Mathematical Approach. 217-240 - Joanna A. Ellis-Monaghan, Greta Pangborn, Laura Beaudin, David Miller, Nick Bruno, Akie Hashimoto:
Minimal Tile and Bond-Edge Types for Self-Assembling DNA Graphs. 241-270
Gene Rearrangements
- Aaron David Goldman, Elizabeth M. Stein, John R. Bracht, Laura F. Landweber:
Programmed Genome Processing in Ciliates. 273-287 - Robert Brijder, Hendrik Jan Hoogeboom:
The Algebra of Gene Assembly in Ciliates. 289-307 - Egor Dolzhenko, Karin Valencia:
Invariants of Graphs Modeling Nucleotide Rearrangements. 309-323
Topological Models and Spatial DNA Embeddings
- Isabel K. Darcy, Stephen D. Levene, Robert G. Scharein:
Introduction to DNA Topology. 327-345 - Dorothy Buck:
Reactions Mediated by Topoisomerases and Other Enzymes: Modelling Localised DNA Transformations. 347-361 - Kenneth L. Baker:
Site-Specific Recombination on Unknot and Unlink Substrates Producing Two-Bridge Links. 363-386 - Kai Ishihara, Koya Shimokawa, Mariel Vázquez:
Site-Specific Recombination Modeled as a Band Surgery: Applications to Xer Recombination. 387-401
Dynamics and Kinetics of Molecular Interactions
- Massa J. Shoura, Stephen D. Levene:
Understanding DNA Looping Through Cre-Recombination Kinetics. 405-418 - Casian Pantea, Ankur Gupta, James B. Rawlings, Gheorghe Craciun:
The QSSA in Chemical Kinetics: As Taught and as Practiced. 419-442 - Reinhard C. Laubenbacher, Franziska Hinkelmann, David Murrugarra, Alan Veliz-Cuba:
Algebraic Models and Their Use in Systems Biology. 443-474 - Michael A. Savageau, Jason G. Lomnitz:
Deconstructing Complex Nonlinear Models in System Design Space. 475-506 - Katarzyna A. Rejniak:
IBCell Morphocharts: A Computational Model for Linking Cell Molecular Activity with Emerging Tissue Morphology. 507-524
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