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Journal Articles
- 2024
[j5]Benjamin Lansdell
, Abbas Shirinifard:
Ethome: tools for machine learning of animal behavior. J. Open Source Softw. 9(96): 5623 (2024)- [j4]Amirkoushyar Ziabari, Derek C. Rose, Abbas Shirinifard, David J. Solecki:
YOLO2U-Net: Detection-guided 3D instance segmentation for microscopy. Pattern Recognit. Lett. 181: 37-42 (2024) - 2014
- [j3]James P. Sluka, Abbas Shirinifard, Maciej Swat, Alin Cosmanescu, Randy W. Heiland, James A. Glazier:
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. Bioinform. 30(16): 2367-2374 (2014) - 2012
- [j2]Abbas Shirinifard, James A. Glazier, Maciej Swat, J. Scott Gens, Fereydoon Family, Yi Jiang, Hans E. Grossniklaus:
Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study. PLoS Comput. Biol. 8(5) (2012) - 2008
- [j1]Roeland Merks, Erica D. Perryn, Abbas Shirinifard, James A. Glazier:
Contact-Inhibited Chemotaxis in De Novo and Sprouting Blood-Vessel Growth. PLoS Comput. Biol. 4(9) (2008)
Conference and Workshop Papers
- 2019
- [c3]Amirkoushyar Ziabari, Derek C. Rose, Matthew R. Eicholtz, David J. Solecki, Abbas Shirinifard:
A 2.5d Yolo-Based Fusion Algorithm for 3d Localization Of Cells. ACSSC 2019: 2185-2190 - [c2]Amirkoushyar Ziabari, Abbas Shirinifard, Matthew R. Eicholtz, David J. Solecki, Derek C. Rose:
A Two-Tier Convolutional Neural Network for Combined Detection and Segmentation in Biological Imagery. GlobalSIP 2019: 1-5 - 2012
- [c1]Randy W. Heiland, Abbas Shirinifard, Maciej Swat, Gilberto L. Thomas, James P. Sluka, Andrew Lumsdaine, Benjamin Zaitlen, James A. Glazier:
Visualizing cells and their connectivity graphs for CompuCell3D. BioVis 2012: 85-90
Informal and Other Publications
- 2022
- [i1]Amirkoushyar Ziabari, Derek C. Rose, Abbas Shirinifard, David J. Solecki:
YOLO2U-Net: Detection-Guided 3D Instance Segmentation for Microscopy. CoRR abs/2207.06215 (2022)
Coauthor Index
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