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Journal Articles
- 2021
[j14]Tizian Schulz
, Roland Wittler, Sven Rahmann, Faraz Hach, Jens Stoye:
Detecting high-scoring local alignments in pangenome graphs. Bioinform. 37(16): 2266-2274 (2021)- [j13]Andreas Rempel, Roland Wittler:
SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction. Bioinform. 37(24): 4868-4870 (2021) - 2020
- [j12]Roland Wittler:
Alignment- and reference-free phylogenomics with colored de Bruijn graphs. Algorithms Mol. Biol. 15(1): 4 (2020) - 2019
- [j11]Nina Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1364-1373 (2019) - 2018
- [j10]Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach:
Dynamic Alignment-Free and Reference-Free Read Compression. J. Comput. Biol. 25(7): 825-836 (2018) - [j9]Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler:
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 15(6): 2094-2100 (2018) - 2016
- [j8]Guillaume Holley, Roland Wittler, Jens Stoye:
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms Mol. Biol. 11: 3 (2016) - 2015
- [j7]Roland Wittler, Tobias Marschall, Alexander Schönhuth, Veli Mäkinen:
Repeat- and error-aware comparison of deletions. Bioinform. 31(18): 2947-2954 (2015) - 2013
- [j6]Roland Wittler:
Unraveling overlapping deletions by agglomerative clustering. BMC Genom. 14(S-1): S12 (2013) - [j5]Roland Wittler:
Correction: Unraveling overlapping deletions by agglomerative clustering. BMC Genom. 14(S-1): S16 (2013) - 2012
- [j4]Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier:
Linearization of ancestral multichromosomal genomes. BMC Bioinform. 13(S-19): S11 (2012) - 2011
- [j3]Roland Wittler, Cédric Chauve:
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinform. 12(S-9): S21 (2011) - [j2]Roland Wittler, Ján Manuch, Murray Patterson, Jens Stoye:
Consistency of Sequence-Based Gene Clusters. J. Comput. Biol. 18(9): 1023-1039 (2011) - 2009
- [j1]Jens Stoye, Roland Wittler:
A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 6(3): 387-400 (2009)
Conference and Workshop Papers
- 2019
- [c8]Roland Wittler:
Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs. WABI 2019: 2:1-2:14 - 2017
- [c7]Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis Antonio Brasil Kowada, Jens Stoye:
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. CPM 2017: 19:1-19:9 - [c6]Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach:
Dynamic Alignment-Free and Reference-Free Read Compression. RECOMB 2017: 50-65 - 2016
- [c5]Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. ISBRA 2016: 200-210 - 2015
- [c4]Guillaume Holley, Roland Wittler, Jens Stoye:
Bloom Filter Trie - A Data Structure for Pan-Genome Storage. WABI 2015: 217-230 - 2014
- [c3]Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler:
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. BSB 2014: 135-143 - 2011
- [c2]Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler:
Tractability Results for the Consecutive-Ones Property with Multiplicity. CPM 2011: 90-103 - 2010
- [c1]Roland Wittler, Jens Stoye:
Consistency of Sequence-Based Gene Clusters. RECOMB-CG 2010: 252-263
Parts in Books or Collections
- 2013
- [p1]Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler:
The Potential of Family-Free Genome Comparison. Models and Algorithms for Genome Evolution 2013: 287-307
Informal and Other Publications
- 2019
- [i4]Roland Wittler:
Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. CoRR abs/1905.04165 (2019) - 2017
- [i3]Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis Antonio Brasil Kowada, Jens Stoye:
Fast and Simple Jumbled Indexing for Binary RLE Strings. CoRR abs/1702.01280 (2017) - 2016
- [i2]Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve:
The SCJ small parsimony problem for weighted gene adjacencies (Extended version). CoRR abs/1603.08819 (2016) - 2013
- [i1]Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier:
Linearization of ancestral multichromosomal genomes. CTW 2013: 169-173
Coauthor Index
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