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Ján Manuch
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2020 – today
- 2020
- [j38]Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny
, Ladislav Stacho:
Weak Coverage of a Rectangular Barrier. Algorithmica 82(4): 721-746 (2020) - [j37]Anne Condon
, Monir Hajiaghayi, David G. Kirkpatrick, Ján Manuch:
Approximate majority analyses using tri-molecular chemical reaction networks. Nat. Comput. 19(1): 249-270 (2020)
2010 – 2019
- 2017
- [j36]Jozef Hales, Alice Héliou, Ján Manuch, Yann Ponty
, Ladislav Stacho:
Combinatorial RNA Design: Designability and Structure-Approximating Algorithm in Watson-Crick and Nussinov-Jacobson Energy Models. Algorithmica 79(3): 835-856 (2017) - [j35]Anne Condon, Bonnie Kirkpatrick, Ján Manuch:
Design of nucleic acid strands with long low-barrier folding pathways. Nat. Comput. 16(2): 261-284 (2017) - [j34]Ashok Rajaraman, João Paulo Pereira Zanetti, Ján Manuch, Cédric Chauve
:
Algorithms and Complexity Results for Genome Mapping Problems. IEEE ACM Trans. Comput. Biol. Bioinform. 14(2): 418-430 (2017) - [c39]Stefan Dobrev, Evangelos Kranakis
, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Sunil M. Shende, Ladislav Stacho:
Weak Coverage of a Rectangular Barrier. CIAC 2017: 196-208 - [c38]Anne Condon, Monir Hajiaghayi, David G. Kirkpatrick, Ján Manuch:
Simplifying Analyses of Chemical Reaction Networks for Approximate Majority. DNA 2017: 188-209 - [i8]Stefan Dobrev, Evangelos Kranakis, Danny Krizanc, Manuel Lafond, Ján Manuch, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho:
Weak Coverage of a Rectangular Barrier. CoRR abs/1701.07294 (2017) - 2016
- [j33]Stefan Dobrev, Mohsen Eftekhari Hesari, Fraser MacQuarie, Ján Manuch, Oscar Morales-Ponce, Lata Narayanan, Jaroslav Opatrny, Ladislav Stacho:
Connectivity with directional antennas in the symmetric communication model. Comput. Geom. 55: 1-25 (2016) - [j32]David Doty, Ho-Lin Chen, Ján Manuch, Arash Rafiey, Ladislav Stacho:
Pattern overlap implies runaway growth in hierarchical tile systems. J. Comput. Geom. 7(2): 3-18 (2016) - 2015
- [j31]Jurek Czyzowicz, Stefan Dobrev, Benson L. Joeris, Evangelos Kranakis
, Danny Krizanc, Ján Manuch, Oscar Morales-Ponce, Jaroslav Opatrny, Ladislav Stacho, Jorge Urrutia:
Monitoring the Plane with Rotating Radars. Graphs Comb. 31(2): 393-405 (2015) - [j30]Anne Condon
, Ján Manuch, Chris Thachuk:
The complexity of string partitioning. J. Discrete Algorithms 32: 24-43 (2015) - [c37]Ho-Lin Chen, David Doty
, Ján Manuch, Arash Rafiey, Ladislav Stacho:
Pattern Overlap Implies Runaway Growth in Hierarchical Tile Systems. SoCG 2015: 360-373 - [c36]Jozef Hales, Ján Manuch, Yann Ponty
, Ladislav Stacho:
Combinatorial RNA Design: Designability and Structure-Approximating Algorithm. CPM 2015: 231-246 - [i7]Jozef Hales, Ján Manuch, Yann Ponty, Ladislav Stacho:
Combinatorial RNA Design: Designability and Structure-Approximating Algorithm. CoRR abs/1502.03201 (2015) - [i6]Jeff Kinne, Ján Manuch, Akbar Rafiey, Arash Rafiey:
Ordering with precedence constraints and budget minimization. CoRR abs/1507.04885 (2015) - 2014
- [j29]Anne Condon, Bonnie Kirkpatrick, Ján Manuch:
Reachability bounds for chemical reaction networks and strand displacement systems. Nat. Comput. 13(4): 499-516 (2014) - [i5]Ján Manuch, Arash Rafiey:
Finding minimum Tucker submatrices. CoRR abs/1401.4739 (2014) - [i4]Ho-Lin Chen, David Doty, Ján Manuch, Arash Rafiey, Ladislav Stacho:
Pattern overlap implies runaway growth in hierarchical tile systems. CoRR abs/1411.6672 (2014) - 2013
- [c35]Javad Safaei, Ján Manuch, Ladislav Stacho:
Learning Polytrees with Constant Number of Roots from Data. Australasian Conference on Artificial Intelligence 2013: 447-452 - [i3]Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier:
Linearization of ancestral multichromosomal genomes. CTW 2013: 169-173 - 2012
- [j28]Ján Manuch, Murray Patterson
, Roland Wittler, Cédric Chauve
, Eric Tannier:
Linearization of ancestral multichromosomal genomes. BMC Bioinform. 13(S-19): S11 (2012) - [j27]Ján Manuch, Murray Patterson, Cédric Chauve:
Hardness results on the gapped consecutive-ones property problem. Discret. Appl. Math. 160(18): 2760-2768 (2012) - [j26]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Algorithm for Haplotype Inference via Galled-Tree Networks with Simple Galls. J. Comput. Biol. 19(4): 439-454 (2012) - [j25]Ján Manuch, Ladislav Stacho, Christine Stoll:
Step-wise tile assembly with a constant number of tile types. Nat. Comput. 11(3): 535-550 (2012) - [c34]Anne Condon, Ján Manuch, Chris Thachuk:
The Complexity of String Partitioning. CPM 2012: 159-172 - [c33]Bahar Behsaz, Ján Manuch, Ladislav Stacho:
Turing Universality of Step-Wise and Stage Assembly at Temperature 1. DNA 2012: 1-11 - [c32]Anne Condon, Bonnie Kirkpatrick, Ján Manuch:
Reachability Bounds for Chemical Reaction Networks and Strand Displacement Systems. DNA 2012: 43-57 - [i2]Anne Condon, Ján Manuch, Chris Thachuk:
The complexity of string partitioning. CoRR abs/1204.2201 (2012) - 2011
- [j24]Roland Wittler, Ján Manuch, Murray Patterson, Jens Stoye
:
Consistency of Sequence-Based Gene Clusters. J. Comput. Biol. 18(9): 1023-1039 (2011) - [j23]Ján Manuch, Murray Patterson:
The Complexity of the Gapped Consecutive-Ones Property Problem for Matrices of Bounded Maximum Degree. J. Comput. Biol. 18(9): 1243-1253 (2011) - [j22]Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon:
NP-completeness of the energy barrier problem without pseudoknots and temporary arcs. Nat. Comput. 10(1): 391-405 (2011) - [c31]Javad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech
:
Evolutionary Conservation of Human Phosphorylation Sites. BIBM 2011: 222-227 - [c30]Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler:
Tractability Results for the Consecutive-Ones Property with Multiplicity. CPM 2011: 90-103 - [c29]Anne Condon, Alan J. Hu, Ján Manuch, Chris Thachuk:
Less Haste, Less Waste: On Recycling and Its Limits in Strand Displacement Systems. DNA 2011: 84-99 - [c28]Ján Manuch, Murray Patterson, Arvind Gupta:
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees. ISBRA 2011: 440-451 - 2010
- [j21]Ján Manuch, Ladislav Stacho, Christine Stoll:
Two Lower Bounds for Self-Assemblies at Temperature 1. J. Comput. Biol. 17(6): 841-852 (2010) - [j20]Arvind Gupta, Mohammad M. Karimi
, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Haplotype Inferring via Galled-Tree Networks Is NP-Complete. J. Comput. Biol. 17(10): 1435-1449 (2010) - [c27]Javad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech
:
Prediction of human protein kinase substrate specificities. BIBM 2010: 259-264 - [c26]Ján Manuch, Murray Patterson, Sheung-Hung Poon
, Chris Thachuk:
Complexity of Finding Non-Planar Rectilinear Drawings of Graphs. GD 2010: 305-316 - [c25]Chris Thachuk, Ján Manuch, Arash Rafiey, Leigh-Anne Mathieson, Ladislav Stacho, Anne Condon:
An Algorithm for the Energy Barrier Problem Without Pseudoknots and Temporary Arcs. Pacific Symposium on Biocomputing 2010: 108-119 - [c24]Ján Manuch, Murray Patterson:
The Complexity of the Gapped Consecutive-Ones Property Problem for Matrices of Bounded Maximum Degree. RECOMB-CG 2010: 278-289
2000 – 2009
- 2009
- [j19]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Haplotype inferring via galled-tree networks using a hypergraph covering problem for special genotype matrices. Discret. Appl. Math. 157(10): 2310-2324 (2009) - [j18]Hayri Ardal, Ján Manuch, Moshe Rosenfeld, Saharon Shelah
, Ladislav Stacho:
The Odd-Distance Plane Graph. Discret. Comput. Geom. 42(2): 132-141 (2009) - [j17]Peter Adams, Hayri Ardal, Ján Manuch, Vu Dinh Hoa, Moshe Rosenfeld, Ladislav Stacho:
Spanning cubic graph designs. Discret. Math. 309(18): 5781-5788 (2009) - [j16]Cédric Chauve, Ján Manuch, Murray Patterson:
On the Gapped Consecutive-Ones Property. Electron. Notes Discret. Math. 34: 121-125 (2009) - [j15]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine (HPC) Model. J. Comput. Biol. 16(1): 19-30 (2009) - [j14]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Inverse Protein Folding in 3D Hexagonal Prism Lattice under HPC Model. J. Comput. Biol. 16(6): 769-802 (2009) - [c23]Ján Manuch, Murray Patterson, Arvind Gupta:
On the Generalised Character Compatibility Problem for Non-branching Character Trees. COCOON 2009: 268-276 - [c22]Ján Manuch, Chris Thachuk, Ladislav Stacho, Anne Condon:
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots. DNA 2009: 106-115 - [c21]Ján Manuch, Ladislav Stacho, Christine Stoll:
Step-Assembly with a Constant Number of Tile Types. ISAAC 2009: 954-963 - [c20]Ján Manuch, Ladislav Stacho, Christine Stoll:
Two lower bounds for self-assemblies at temperature 1. SAC 2009: 808-809 - [i1]Cédric Chauve, Ján Manuch, Murray Patterson:
Hardness Results for the Gapped Consecutive-Ones Property. CoRR abs/0912.0309 (2009) - 2008
- [j13]Ján Manuch, Daya Ram Gaur
:
Fitting protein Chains to cubic Lattice is NP-Complete. J. Bioinform. Comput. Biol. 6(1): 93-106 (2008) - [j12]Arvind Gupta, Jan van den Heuvel
, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
On the Complexity of Ordered Colorings. SIAM J. Discret. Math. 22(2): 832-847 (2008) - [c19]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Structure-Approximating Design of Stable Proteins in 2D HP Model Fortified by Cysteine Monomers. APBC 2008: 49-58 - [c18]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Inverse protein folding in 3D hexagonal prism lattice under HP model. BIOCOMP 2008: 619-625 - [c17]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
A Robust Class of Stable Proteins in the 2D HPC Model. BIRD 2008: 180-192 - [c16]Anne Condon, Ján Manuch, Chris Thachuk:
Complexity of a Collision-Aware String Partition Problem and Its Relation to Oligo Design for Gene Synthesis. COCOON 2008: 265-275 - [c15]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Haplotype Inferring Via Galled-Tree Networks Is NP-Complete. COCOON 2008: 287-298 - 2007
- [c14]Ján Manuch, Daya Ram Gaur:
Fitting Protein Chains to Cubic Lattice is NP-Complete. APBC 2007: 153-164 - [c13]Arvind Gupta, Mehdi Karimi, Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey:
Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism Lattice Under HP Model. BIOCOMP 2007: 362-369 - [c12]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls. ISBRA 2007: 121-132 - 2006
- [j11]Arvind Gupta, Ján Manuch, Xiaohong Zhao, Ladislav Stacho:
Characterization of the Existence of Galled-tree Networks. J. Bioinform. Comput. Biol. 4(6): 1309-1328 (2006) - [c11]Daya Ram Gaur, Ramesh Krishnamurti, Ján Manuch:
Improved Approximation Algorithm for Scheduling Tasks with a Choice of Start Times. ACiD 2006: 85-94 - [c10]Ján Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta:
Characterization of the Existence of Galled-Tree Networks. APBC 2006: 297-306 - [c9]Jonathan Kavanagh, David G. Mitchell, Eugenia Ternovska, Ján Manuch, Xiaohong Zhao, Arvind Gupta:
Constructing Camin-Sokal Phylogenies Via Answer Set Programming. LPAR 2006: 452-466 - 2005
- [j10]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Ordered 3-colorings. Electron. Notes Discret. Math. 22: 299-300 (2005) - [j9]Arvind Gupta, Ján Manuch, Ladislav Stacho:
Structure-Approximating Inverse Protein Folding Problem in the 2D HP Model. J. Comput. Biol. 12(10): 1328-1345 (2005) - [j8]Petra Berenbrink, Tom Friedetzky
, Ján Manuch, Ladislav Stacho:
(quasi) Spanners for Mobile Ad Hoc Networks. J. Interconnect. Networks 6(2): 63-84 (2005) - 2004
- [c8]Arvind Gupta, Ján Manuch, Ladislav Stacho, Chenchen Zhu:
Small Phylogeny Problem: Character Evolution Trees. CPM 2004: 230-243 - [c7]Arvind Gupta, Ján Manuch, Ladislav Stacho:
Inverse Protein Folding in 2D HP Mode (Extended Abstract). CSB 2004: 311-318 - [c6]Arvind Gupta, Ján Manuch, Ladislav Stacho:
Fault Tolerant Forwarding and Optical Indexes: A Design Theory Approach. SIROCCO 2004: 197-208 - 2003
- [j7]Ján Manuch, Ladislav Stacho:
On f-wise Arc Forwarding Index and Wavelength Allocations in Faulty All-optical Hypercubes. RAIRO Theor. Informatics Appl. 37(3): 255-270 (2003) - [j6]Juhani Karhumäki, Ján Manuch, Wojciech Plandowski:
A defect theorem for bi-infinite words. Theor. Comput. Sci. 292(1): 237-243 (2003) - [j5]Pavol Duris, Ján Manuch:
On the computational complexity of infinite words. Theor. Comput. Sci. 295: 141-151 (2003) - 2002
- [j4]Juhani Karhumäki, Ján Manuch:
Multiple factorizations of words and defect effect. Theor. Comput. Sci. 273(1-2): 81-97 (2002) - 2001
- [j3]Ján Manuch:
Defect Effect of Bi-infinite Words in the Two-element Case. Discret. Math. Theor. Comput. Sci. 4(2): 273-290 (2001) - [j2]Julien Cassaigne, Juhani Karhumäki, Ján Manuch:
On Conjugacy of Languages. RAIRO Theor. Informatics Appl. 35(6): 535-550 (2001) - [c5]Pavol Duris, Ján Manuch:
On the Computational Complexity of Infinite Words. MFCS 2001: 328-337 - 2000
- [j1]Ján Manuch:
Construction of very hard functions for multiparty communication complexity. RAIRO Theor. Informatics Appl. 34(1): 61-76 (2000)
1990 – 1999
- 1999
- [c4]Ján Manuch:
Characterization of a word by its subwords. Developments in Language Theory 1999: 210-219 - [c3]Ján Manuch:
Multiparty Communication Complexity: Very Hard Functions. MFCS 1999: 160-169 - [c2]Ján Manuch, Laszlo Stacho:
Fault-Tolerant Wavelength Allocations in All-optical Hypercubes. SIROCCO 1999: 219-222 - 1998
- [c1]Juhani Karhumäki, Ján Manuch, Wojciech Plandowski:
On Defect Effect of Bi-Infinite Words. MFCS 1998: 674-682
Coauthor Index
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