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ORCIDLorenzo Farina
Person information
- affiliation: Sapienza University of Rome, Italy
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Journal Articles
- 2023
[j27]Lorenzo Farina
:
Systems Precision Medicine: Putting the Pieces Back Together. Syst. 11(7): 367 (2023)- 2022
- [j26]Federica Conte, Federico Papa, Paola Paci, Lorenzo Farina:
StaRTrEK: in silico estimation of RNA half-lives from genome-wide time-course experiments without transcriptional inhibition. BMC Bioinform. 23(1): 190 (2022) - 2021
- [j25]Stefania Colonnese, Manuela Petti, Lorenzo Farina, Gaetano Scarano, Francesca Cuomo:
Protein-Protein Interaction Prediction via Graph Signal Processing. IEEE Access 9: 142681-142692 (2021) - [j24]Manuela Petti, Antonella Verrienti, Paola Paci, Lorenzo Farina:
SEaCorAl: Identifying and contrasting the regulation-correlation bias in RNA-Seq paired expression data of patient groups. Comput. Biol. Medicine 135: 104567 (2021) - [j23]Giulia Fiscon, Federica Conte, Lorenzo Farina, Paola Paci:
SAveRUNNER: A network-based algorithm for drug repurposing and its application to COVID-19. PLoS Comput. Biol. 17(2) (2021) - 2020
- [j22]Manuela Petti, Daniele Bizzarri, Antonella Verrienti, Rosa Falcone, Lorenzo Farina:
Connectivity Significance for Disease Gene Prioritization in an Expanding Universe. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 2155-2161 (2020) - 2014
- [j21]Marianna De Santis, Francesco Rinaldi, Emmanuela Falcone, Stefano Lucidi, Giulia Piaggio, Aymone Gurtner, Lorenzo Farina:
Combining optimization and machine learning techniques for genome-wide prediction of human cell cycle-regulated genes. Bioinform. 30(2): 228-233 (2014) - [j20]Paola Paci, Teresa Colombo, Lorenzo Farina:
Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer. BMC Syst. Biol. 8: 83 (2014) - 2012
- [j19]Filippo Cacace, Paola Paci, Valerio Cusimano, Alfredo Germani, Lorenzo Farina:
Stochastic Modeling of Expression Kinetics Identifies Messenger Half-Lives and Reveals Sequential Waves of Co-ordinated Transcription and Decay. PLoS Comput. Biol. 8(11) (2012) - [j18]Filippo Cacace, Lorenzo Farina, Alfredo Germani, Costanzo Manes:
Internally Positive Representation of a Class of Continuous Time Systems. IEEE Trans. Autom. Control. 57(12): 3158-3163 (2012) - 2010
- [j17]Lorenzo Farina:
Discussion on: "Representation of a Class of MIMO Systems via Internally Positive Realization". Eur. J. Control 16(3): 305-306 (2010) - [j16]Lorenzo Farina, Alfredo Germani, Gabriella Mavelli, Pasquale Palumbo:
Identification of Regulatory Network Motifs from Gene Expression Data. J. Math. Model. Algorithms 9(3): 233-245 (2010) - 2009
- [j15]Nicola Soranzo, Mattia Zampieri, Lorenzo Farina, Claudio Altafini:
mRNA stability and the unfolding of gene expression in the long-period yeast metabolic cycle. BMC Syst. Biol. 3: 18 (2009) - 2008
- [j14]Lorenzo Farina, Alberto De Santis, Samanta Salvucci, Giorgio Morelli, Ida Ruberti:
Embedding mRNA Stability in Correlation Analysis of Time-Series Gene Expression Data. PLoS Comput. Biol. 4(8) (2008) - 2006
- [j13]Luca Benvenuti, Lorenzo Farina:
The Geometry of the Reachability Set for Linear Discrete-time Systems with Positive Controls. SIAM J. Matrix Anal. Appl. 28(2): 306-325 (2006) - [j12]Luca Benvenuti, Lorenzo Farina:
Nonnegative matrices in digital signal processing. Signal Process. 86(9): 2388-2392 (2006) - [j11]Luca Benvenuti, Lorenzo Farina:
Correction to "A Note on Minimality of Positive Realizations". IEEE Trans. Circuits Syst. I Regul. Pap. 53-I(1): 215 (2006) - 2004
- [j10]Luca Benvenuti, Lorenzo Farina:
Eigenvalue regions for positive systems. Syst. Control. Lett. 51(3-4): 325-330 (2004) - [j9]Luca Benvenuti, Lorenzo Farina:
A tutorial on the positive realization problem. IEEE Trans. Autom. Control. 49(5): 651-664 (2004) - 2003
- [j8]Luca Benvenuti, Lorenzo Farina:
Minimal positive realizations: a survey of recent results and open problems. Kybernetika 39(2): 217-228 (2003) - 2002
- [j7]Alberto De Santis, Lorenzo Farina:
Identification of positive linear systems with Poisson output transformation. Autom. 38(5): 861-868 (2002) - [j6]Luca Benvenuti, Alberto De Santis, Lorenzo Farina:
On model consistency in compartmental systems identification. Autom. 38(11): 1969-1976 (2002) - [j5]Luca Benvenuti, Lorenzo Farina:
Linear programming approach to constrained feedback control. Int. J. Syst. Sci. 33(1): 45-53 (2002) - [j4]Luca Benvenuti, Lorenzo Farina:
Positive and compartmental systems. IEEE Trans. Autom. Control. 47(2): 370-373 (2002) - 2000
- [j3]Maria Elena Valcher, Lorenzo Farina:
An Algebraic Approach to the Construction of Polyhedral Invariant Cones. SIAM J. Matrix Anal. Appl. 22(2): 453-471 (2000) - 1997
- [j2]Lorenzo Farina, Luca Benvenuti:
Polyhedral reachable set with positive controls. Math. Control. Signals Syst. 10(4): 364-380 (1997) - 1996
- [j1]Luca Benvenuti, Lorenzo Farina:
Discrete-time filtering via charge routing networks. Signal Process. 49(3): 207-215 (1996)
Conference and Workshop Papers
- 2024
- [c12]Lorenzo Farina, Marco Rapelli, Barbara Mavi Masini, Claudio Casetti, Alessandro Bazzi:
Maneuver Coordination Using V2I to Improve Traffic Efficiency at Intersections. VNC 2024: 203-210 - 2023
- [c11]Caterina Alfano, Lorenzo Farina, Manuela Petti:
Stratification of metastatic melanoma patients based on mutational signatures. BIBM 2023: 2798-2802 - [c10]Davide Mascolo, Lorenzo Farina, Manuela Petti:
Multi-layer network modelling of genomic and transcriptomic data to investigate the response to checkpoint inhibitors in NSCLC. BIBM 2023: 2825-2830 - [c9]Alice La Fata, Lorenzo Farina, Marina Bernardi, Gabriele Moser, Renato Procopio, Elisabetta Fiori:
Prediction of Cloud-to-Ground Lightning Through Gaussian Process Regression with Satellite Thermal Infrared Imagery and Numerical Weather Prediction Modeling Data. IGARSS 2023: 2508-2511 - 2022
- [c8]Caterina Alfano, Lorenzo Farina, Manuela Petti:
Differential Co-expression Network Analysis to Investigate Sexual Dimorphism in Colon Cancer. BIBM 2022: 1873-1878 - 2019
- [c7]Michele Gentili, Leonardo Martini, Manuela Petti, Lorenzo Farina, Luca Becchetti:
Biological Random Walks: Integrating heterogeneous data in disease gene prioritization. CIBCB 2019: 1-8 - [c6]Marco Angelini, Graziano Blasilli, Lorenzo Farina, Simone Lenti, Giuseppe Santucci:
NEMESIS (NEtwork MEdicine analySIS): Towards Visual Exploration of Network Medicine Data. VISIGRAPP (3: IVAPP) 2019: 322-329 - 2010
- [c5]Filippo Cacace, Lorenzo Farina, Alfredo Germani, Costanzo Manes:
A method for Internally Positive Realization of continuous time systems. CDC 2010: 4978-4983 - [c4]Filippo Cacace, Lorenzo Farina, Alfredo Germani, Pasquale Palumbo:
Discrete-time models for gene transcriptional regulation networks. CDC 2010: 7618-7623 - 2004
- [c3]Fausto Borghetti, Lorenzo Farina, Piero Malcovati, Franco Maloberti:
A high speed and low power CMOS current comparator for photon counting systems. ISCAS (1) 2004: 453-456 - 2002
- [c2]Luca Benvenuti, Lorenzo Farina:
How many compartments do we really need? [LTI systems]. ACC 2002: 4614-4619 - [c1]Luca Benvenuti, Alberto De Santis, Lorenzo Farina:
Embedding a-priori positivity in systems modelling. ACC 2002: 4626-4631
Editorship
- 2003
- [e1]Luca Benvenuti, Alberto De Santis, Lorenzo Farina:
Positive Systems, Proceedings of the First Multidisciplinary International Symposium on Positive Systems: Theory and Applications (POSTA 2003), Rome, Italy, August 28-30, 2003. Lecture Notes in Control and Information Sciences 294, Springer 2003, ISBN 3-540-40342-6 [contents]
Reference Works
- 2019
- [r1]Paolo Tieri, Lorenzo Farina, Manuela Petti, Laura Astolfi, Paola Paci, Filippo Castiglione:
Network Inference and Reconstruction in Bioinformatics. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 805-813
Informal and Other Publications
- 2020
- [i1]Michele Gentili, Leonardo Martini, Manuela Petti, Lorenzo Farina, Luca Becchetti:
Biological Random Walks: integrating heterogeneous data in disease gene prioritization. CoRR abs/2002.07064 (2020)
Coauthor Index
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