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2020 – today
- 2024
[j14]Matthew R. Lakin, Petr Sulc:
Preface. Nat. Comput. 23(3): 453 (2024)- [j13]Jhe-Yu Liou
, Muaaz Awan, Kirtus G. Leyba, Petr Sulc, Steven A. Hofmeyr, Carole-Jean Wu, Stephanie Forrest:
Evolving to Find Optimizations Humans Miss: Using Evolutionary Computation to Improve GPU Code for Bioinformatics Applications. ACM Trans. Evol. Learn. Optim. 4(4): 21:1-21:29 (2024) - 2023
- [j12]Zhengyue Zhang, Jirí Sponer, Giovanni Bussi, Vojtech Mlýnský, Petr Sulc, Chad R. Simmons, Nicholas Stephanopoulos, Miroslav Krepl:
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations. J. Chem. Inf. Model. 63(9): 2794-2809 (2023) - [j11]Erik Poppleton, Michael Matthies, Debesh Mandal, Flavio Romano, Petr Sulc, Lorenzo Rovigatti:
oxDNA: coarse-grained simulations of nucleic acids made simple. J. Open Source Softw. 8(81): 4693 (2023) - [c1]Matthew L. Sample, Michael Matthies, Petr Sulc:
Coarse-Grained Simulations Of Dna And Rna Systems With Oxdna And Oxrna Models: Tutorial. WSC 2023: 91-105 - 2022
- [j10]Menghan Liu, Erik Poppleton, Giulia Pedrielli, Petr Sulc, Dimitri P. Bertsekas:
ExpertRNA: A New Framework for RNA Secondary Structure Prediction. INFORMS J. Comput. 34(5): 2464-2484 (2022) - [j9]Erik Poppleton, Aatmik Mallya, Swarup Dey, Joel Joseph, Petr Sulc:
Nanobase.org: a repository for DNA and RNA nanostructures. Nucleic Acids Res. 50(D1): 246-252 (2022) - [j8]Andrea Di Gioacchino, Jonah Procyk, Marco Molari, John S. Schreck, Yu Zhou, Yan Liu, Rémi Monasson, Simona Cocco, Petr Sulc:
Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection. PLoS Comput. Biol. 18(9): 1010561 (2022) - 2021
- [j7]Erik Poppleton, Roger Romero, Aatmik Mallya, Lorenzo Rovigatti, Petr Sulc:
OxDNA.org: a public webserver for coarse-grained simulations of DNA and RNA nanostructures. Nucleic Acids Res. 49(Webserver-Issue): 491-498 (2021) - [e1]Matthew R. Lakin, Petr Sulc:
27th International Conference on DNA Computing and Molecular Programming, DNA 27, September 13-16, 2021, Oxford, UK (Virtual Conference). LIPIcs 205, Schloss Dagstuhl - Leibniz-Zentrum für Informatik 2021, ISBN 978-3-95977-205-1 [contents]
2010 – 2019
- 2019
- [j6]Antonio Suma, Erik Poppleton, Michael Matthies, Petr Sulc, Flavio Romano, Ard A. Louis, Jonathan P. K. Doye, Cristian Micheletti, Lorenzo Rovigatti:
TacoxDNA: A user-friendly web server for simulations of complex DNA structures, from single strands to origami. J. Comput. Chem. 40(29): 2586-2595 (2019) - 2017
- [j5]Petr Sulc, Ludek Pesek, Vítezslav Bula, Jan Cibulka, Tomás Bohác, Hubert Tasek:
Pre-stressed rubber material constant estimation for resilient wheel application. Adv. Eng. Softw. 113: 76-83 (2017) - 2015
- [j4]Lorenzo Rovigatti, Petr Sulc, István Z. Reguly, Flavio Romano:
A comparison between parallelization approaches in molecular dynamics simulations on GPUs. J. Comput. Chem. 36(1): 1-8 (2015) - 2014
- [j3]Petr Sulc, Thomas E. Ouldridge, Flavio Romano, Jonathan P. K. Doye, Ard A. Louis:
Simulating a burnt-bridges DNA motor with a coarse-grained DNA model. Nat. Comput. 13(4): 535-547 (2014) - 2013
- [i2]Petr Sulc, Scott Backhaus, Michael Chertkov:
Optimal Distributed Control of Reactive Power via the Alternating Direction Method of Multipliers. CoRR abs/1310.5748 (2013) - 2011
- [j2]Konstantin S. Turitsyn, Petr Sulc, Scott Backhaus, Michael Chertkov:
Options for Control of Reactive Power by Distributed Photovoltaic Generators. Proc. IEEE 99(6): 1063-1073 (2011) - 2010
- [j1]Petr Sulc, Andreas Wagner, Olivier C. Martin:
Quantifying Slow Evolutionary Dynamics in RNA Fitness Landscapes. J. Bioinform. Comput. Biol. 8(6): 1027-1040 (2010)
2000 – 2009
- 2009
- [i1]Petr Sulc, Lenka Zdeborová:
Belief propagation for graph partitioning. CoRR abs/0912.3563 (2009)
Coauthor Index
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