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2020 – today
- 2023
[j10]Sean Upchurch
, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin C. Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu:
RNAget: an API to securely retrieve RNA quantifications. Bioinform. 39(4) (2023)- 2022
- [j9]Toby Dylan Hocking, Guillem Rigaill, Paul Fearnhead, Guillaume Bourque:
Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data. J. Stat. Softw. 101(10) (2022) - 2020
- [j8]Toby Dylan Hocking, Guillem Rigaill, Paul Fearnhead, Guillaume Bourque:
Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection in Genomic Data. J. Mach. Learn. Res. 21: 87:1-87:40 (2020) - [c6]Toby Dylan Hocking, Guillaume Bourque:
Machine Learning Algorithms for Simultaneous Supervised Detection of Peaks in Multiple Samples andCell Types. PSB 2020: 367-378
2010 – 2019
- 2019
- [j7]Jonathan Laperle, Simon Hébert-Deschamps, Joanny Raby, David A. de Lima Morais, Michel Barrette, David Bujold, Charlotte Bastin, Marc-Antoine Robert, Jean-François Nadeau, Marie Harel, Alexei Nordell-Markovits, Alain Veilleux, Guillaume Bourque, Pierre-Étienne Jacques:
The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets. Bioinform. 35(4): 674-676 (2019) - [j6]Charles E. Breeze, Alex P. Reynolds, Jenny van Dongen, Ian Dunham, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck:
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data. Bioinform. 35(22): 4767-4769 (2019) - [c5]Josée Lévesque, Eldon Puckrin, Luc Levert, Guillaume Bourque:
The use of hyperspectral remote sensing to detect PCB contaminated soils in the 0.35 to 12 micron spectral range. IGARSS 2019: 5968-5971 - 2018
- [j5]Jasmine Chong, Othman Soufan, Carin Li, Iurie Caraus, Shuzhao Li, Guillaume Bourque, David S. Wishart, Jianguo Xia:
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis. Nucleic Acids Res. 46(Webserver-Issue): W486-W494 (2018) - 2017
- [j4]Toby Dylan Hocking, Patricia Goerner-Potvin, Andreanne Morin, Xiaojian Shao, Tomi Pastinen, Guillaume Bourque:
Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning. Bioinform. 33(4): 491-499 (2017) - 2015
- [c4]Toby Hocking, Guillem Rigaill, Guillaume Bourque:
PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data. ICML 2015: 324-332 - 2010
- [j3]Chi Ho Lin, Hao Zhao, Sean Harry Lowcay, Atif Shahab, Guillaume Bourque:
webMGR: an online tool for the multiple genome rearrangement problem. Bioinform. 26(3): 408-410 (2010) - [c3]Zejun Zheng, Bertil Schmidt, Guillaume Bourque:
Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine. BIBM 2010: 13-16
2000 – 2009
- 2007
- [c2]Hao Zhao, Guillaume Bourque:
Recovering True Rearrangement Events on Phylogenetic Trees. RECOMB-CG 2007: 149-161 - 2006
- [j2]Guillaume Bourque, Louxin Zhang:
Models and Methods in Comparative Genomics. Adv. Comput. 68: 60-105 (2006) - [e1]Guillaume Bourque, Nadia El-Mabrouk:
Comparative Genomics, RECOMB 2006 International Workshop, RCG 2006, Montreal, Canada, September 24-26, 2006, Proceedings. Lecture Notes in Computer Science 4205, Springer 2006, ISBN 3-540-44529-3 [contents] - 2005
- [c1]Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk:
Maximizing Synteny Blocks to Identify Ancestral Homologs. Comparative Genomics 2005: 21-34 - 2004
- [j1]Guillaume Bourque, David Sankoff:
Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues. J. Bioinform. Comput. Biol. 2(4): 765-784 (2004)
Coauthor Index
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