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2020 – today
- 2022
[j9]Francesco P. Panei
, Rachel Torchet, Hervé Ménager, Paraskevi Gkeka, Massimiliano Bonomi:
HARIBOSS: a curated database of RNA-small molecules structures to aid rational drug design. Bioinform. 38(17): 4185-4193 (2022)- 2020
- [j8]James S. Fraser, Kresten Lindorff-Larsen, Massimiliano Bonomi:
What Will Computational Modeling Approaches Have to Say in the Era of Atomistic Cryo-EM Data? J. Chem. Inf. Model. 60(5): 2410-2412 (2020)
2010 – 2019
- 2017
- [j7]Massimiliano Bonomi, Carlo Camilloni:
Integrative structural and dynamical biology with PLUMED-ISDB. Bioinform. 33(24): 3999-4000 (2017) - 2015
- [j6]Claire Colas, Christof Grewer, Nicholas James Otte, Armanda Gameiro, Thomas Albers, Kurnvir Singh, Helen Shere, Massimiliano Bonomi, Jeff Holst, Avner Schlessinger:
Ligand Discovery for the Alanine-Serine-Cysteine Transporter (ASCT2, SLC1A5) from Homology Modeling and Virtual Screening. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j5]Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi, Carlo Camilloni, Giovanni Bussi:
PLUMED 2: New feathers for an old bird. Comput. Phys. Commun. 185(2): 604-613 (2014) - [j4]Lili X. Peng, Monica T. Hsu, Massimiliano Bonomi, David A. Agard, Matthew P. Jacobson:
The Free Energy Profile of Tubulin Straight-Bent Conformational Changes, with Implications for Microtubule Assembly and Drug Discovery. PLoS Comput. Biol. 10(2) (2014) - 2011
- [j3]Adriana Pietropaolo, Davide Branduardi, Massimiliano Bonomi, Michele Parrinello:
A chirality-based metrics for free-energy calculations in biomolecular systems. J. Comput. Chem. 32(12): 2627-2637 (2011)
2000 – 2009
- 2009
- [j2]Massimiliano Bonomi, Davide Branduardi, Giovanni Bussi, Carlo Camilloni, Davide Provasi, Paolo Raiteri, Davide Donadio, Fabrizio Marinelli, Fabio Pietrucci, Ricardo A. Broglia, Michele Parrinello:
PLUMED: A portable plugin for free-energy calculations with molecular dynamics. Comput. Phys. Commun. 180(10): 1961-1972 (2009) - [j1]Massimiliano Bonomi, Alessandro Barducci, Michele Parrinello:
Reconstructing the equilibrium Boltzmann distribution from well-tempered metadynamics. J. Comput. Chem. 30(11): 1615-1621 (2009)
Coauthor Index
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