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2020 – today
- 2024
[j29]Woosung Jeon
, Dongsup Kim:
AbFlex: designing antibody complementarity determining regions with flexible CDR definition. Bioinform. 40(3) (2024)- 2022
- [j28]Dongchan Yang, Taesu Chung, Dongsup Kim:
DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction Annotator. Bioinform. 38(14): 3501-3512 (2022) - 2020
- [j27]Aeri Lee, Dongsup Kim:
CRDS: Consensus Reverse Docking System for target fishing. Bioinform. 36(3): 959-960 (2020) - [j26]Ha Young Kim, Dongsup Kim:
Prediction of mutation effects using a deep temporal convolutional network. Bioinform. 36(7): 2047-2052 (2020)
2010 – 2019
- 2019
- [j25]Woosung Jeon, Dongsup Kim:
FP2VEC: a new molecular featurizer for learning molecular properties. Bioinform. 35(23): 4979-4985 (2019) - 2018
- [j24]Aeri Lee, Seungpyo Hong, Dongsup Kim:
KRDS: a web server for evaluating drug resistance mutations in kinases by molecular docking. J. Cheminformatics 10(1): 20:1-20:10 (2018) - [j23]Dongchan Yang, Insu Jang, Jinhyuk Choi, Minseo Kim, Andrew J. Lee, Hyun-Woong Kim, Junghyun Eom, Dongsup Kim, Inkyung Jung, Byungwook Lee:
3DIV: A 3D-genome Interaction Viewer and database. Nucleic Acids Res. 46(Database-Issue): D52-D57 (2018) - 2017
- [j22]Youngmahn Han, Dongsup Kim:
Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction. BMC Bioinform. 18(1): 585:1-585:9 (2017) - [j21]Kyoungyeul Lee, Minho Lee, Dongsup Kim:
Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing server. BMC Bioinform. 18(16): 75-86 (2017) - 2016
- [j20]Seungpyo Hong, Dongsup Kim:
Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffolds. Bioinform. 32(11): 1709-1715 (2016) - [j19]Chan-seok Jeong, Dongsup Kim:
Structure-based Markov random field model for representing evolutionary constraints on functional sites. BMC Bioinform. 17: 99 (2016) - 2013
- [j18]Minho Lee, Sangjo Han, Hyeshik Chang, Youn-Sig Kwak, David M. Weller, Dongsup Kim:
FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-action. BMC Genom. 14(S-1): S6 (2013) - [j17]Minho Lee, Keunwan Park, Dongsup Kim:
Interaction network among functional drug groups. BMC Syst. Biol. 7(S-3): S4 (2013) - 2012
- [j16]Minho Lee, Dongsup Kim:
Large-scale reverse docking profiles and their applications. BMC Bioinform. 13(S-17): S6 (2012) - [j15]Changki Hong, Minho Lee, Dongsup Kim, Dong San Kim, Kwang-Hyun Cho, Insik Shin:
A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network. BMC Syst. Biol. 6: 129 (2012) - [c5]Chan-seok Jeong, Dongsup Kim:
Coevolved Residues and the Functional Association for Intrinsically Disordered Proteins. Pacific Symposium on Biocomputing 2012: 140-151 - 2011
- [j14]Keunwan Park, Dongsup Kim:
Modeling allosteric signal propagation using protein structure networks. BMC Bioinform. 12(S-1): S23 (2011) - [j13]Keunwan Park, Dongsup Kim:
Drug-drug relationship based on target information: application to drug target identification. BMC Syst. Biol. 5(S-2): S12 (2011) - 2010
- [j12]Inkyung Jung, Akihisa Matsuyama, Minoru Yoshida, Dongsup Kim:
PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship. BMC Bioinform. 11(S-1): 10 (2010) - [j11]Chan-seok Jeong, Dongsup Kim:
Linear predictive coding representation of correlated mutation for protein sequence alignment. BMC Bioinform. 11(S-2): 2 (2010)
2000 – 2009
- 2009
- [j10]Inkyung Jung, Dongsup Kim:
SIMPRO: simple protein homology detection method by using indirect signals. Bioinform. 25(6): 729-735 (2009) - [j9]Byung-chul Lee, Dongsup Kim:
A new method for revealing correlated mutations under the structural and functional constraints in proteins. Bioinform. 25(19): 2506-2513 (2009) - [c4]Chan-seok Jeong, Dongsup Kim:
Linear predictive coding representation of correlated mutation for protein sequence alignment. DTMBIO 2009: 27-34 - 2008
- [j8]Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup Kim:
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detection. BMC Bioinform. 9 (2008) - [j7]Sangjo Han, Dongsup Kim:
Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target Pathways. PLoS Comput. Biol. 4(8) (2008) - [e1]Colin Fyfe, Dongsup Kim, Soo-Young Lee, Hujun Yin:
Intelligent Data Engineering and Automated Learning - IDEAL 2008, 9th International Conference, Daejeon, South Korea, November 2-5, 2008, Proceedings. Lecture Notes in Computer Science 5326, Springer 2008, ISBN 978-3-540-88905-2 [contents] - 2007
- [j6]Minho Lee, Chan-seok Jeong, Dongsup Kim:
Predicting and improving the protein sequence alignment quality by support vector regression. BMC Bioinform. 8 (2007) - [c3]Sheehyun Kim, Dongsup Kim:
Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression Profiles. BIBE 2007: 1035-1040 - 2006
- [j5]Sangjo Han, Dongsup Kim:
AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs. BMC Bioinform. 7: 179 (2006) - 2005
- [j4]Sangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-seok Jeong, Soyoung Lee, Dongsup Kim:
Fold recognition by combining profile-profile alignment and support vector machine. Bioinform. 21(11): 2667-2673 (2005) - 2003
- [j3]Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
A computational pipeline for protein structure prediction and analysis at genome scale. Bioinform. 19(15): 1985-1996 (2003) - [j2]Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu:
Raptor: Optimal Protein Threading by Linear Programming. J. Bioinform. Comput. Biol. 1(1): 95-118 (2003) - [c2]Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE 2003: 3-10 - [c1]Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu:
Protein Threading by Linear Programming. Pacific Symposium on Biocomputing 2003: 264-275 - 2002
- [j1]Ying Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang:
Automated assignment of backbone NMR peaks using constrained bipartite matching. Comput. Sci. Eng. 4(1): 50-62 (2002)
Coauthor Index
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