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Rency S. Varghese

Rency Susan Varghese

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Journal Articles

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2007
[j3]
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  - journals/bioinformatics/RessomVDHALG07
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Habtom W. Ressom, Rency S. Varghese, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Peak selection from MALDI-TOF mass spectra using ant colony optimization. Bioinform. 23(5): 619-626 (2007)
2005
[j2]
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Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, Radoslav Goldman:
Analysis of mass spectral serum profiles for biomarker selection. Bioinform. 21(21): 4039-4045 (2005)
[j1]
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Habtom W. Ressom, Padma Natarajan, Rency S. Varghese, Mohamad T. Musavi:
Applications of fuzzy logic in genomics. Fuzzy Sets Syst. 152(1): 125-138 (2005)

Conference and Workshop Papers

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2023
[c20]
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Yichen Guo, Marie Denis, Rency S. Varghese, Sidharth S. Jain, Mahlet G. Tadesse, Habtom W. Ressom:
Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma. BIBM 2023: 3768-3774
[c19]
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Hoi Yan Katharine Chau, Hongyu Ao, Xinran Zhang, Shijinqiu Gao, Rency S. Varghese, Habtom W. Ressom:
Deep Learning Based Metabolite Annotation. EMBC 2023: 1-4
2022
[c18]
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Sidharth S. Jain, Megan E. Barefoot, Rency S. Varghese, Habtom W. Ressom:
Cell-type Deconvolution and Age Estimation Using DNA Methylation Reveals NK Cell Deficiency in the Hepatocellular Carcinoma Microenvironment. BIBM 2022: 444-449
[c17]
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Marie Denis, Rency S. Varghese, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom:
A Bayesian two-step integrative procedure incorporating prior knowledge for the identification of miRNA-mRNAs involved in hepatocellular carcinoma. EMBC 2022: 81-86
2020
[c16]
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Yifan Chen, Megan E. Barefoot, Rency S. Varghese, Kuijun Wang, Cristina Di Poto, Habtom W. Ressom:
Integrative Analysis to Identify Race-Associated Metabolite Biomarkers for Hepatocellular Carcinoma. EMBC 2020: 5300-5303
[c15]
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Rency S. Varghese, Yuan Zhou, Yifan Chen, Megan E. Barefoot, Mahlet G. Tadesse, Habtom W. Ressom:
Epigenetic changes associated with mechanisms of disparities in hepatocellular carcinoma. EMBC 2020: 5320-5325
2019
[c14]
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  - conf/bibm/BarefootCVZR19
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Megan E. Barefoot, Yifan Chen, Rency S. Varghese, Yuan Zhou, Habtom W. Ressom:
Integrative Analysis of DNA Methylation and Gene Expression Patterns in Tissues from Hepatocellular Carcinoma Patients. BIBM 2019: 267-274
[c13]
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Megan E. Barefoot, Rency S. Varghese, Yuan Zhou, Cristina Di Poto, Alessia Ferrarini, Habtom W. Ressom:
Multi-omic Pathway and Network Analysis to Identify Biomarkers for Hepatocellular Carcinoma. EMBC 2019: 1350-1354
2018
[c12]
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Zhenzhi Li, Yiming Zuo, Chaohui Xu, Rency S. Varghese, Habtom W. Ressom:
INDEED: R package for network based differential expression analysis. BIBM 2018: 2709-2712
2016
[c11]
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Rency S. Varghese, Yiming Zuo, Yi Zhao, Yong-Wei Zhang, Sandra A. Jablonski, Mariaelena Pierobon, Emanuel F. Petricoin, Habtom W. Ressom, Louis M. Weiner:
Network-based analysis of reverse phase protein array data. BIBM 2016: 312-317
[c10]
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Habtom W. Ressom, Cristina Di Poto, Alessia Ferrarini, Yunli Hu, Mohammad R. Nezami Ranjbar, Ehwang Song, Rency S. Varghese, Minkun Wang, Shiyue Zhou, Rui Zhu, Yiming Zuo, Mahlet G. Tadesse, Yehia Mechref:
Multi-omic approaches for characterization of hepatocellular carcinoma. EMBC 2016: 3437-3440
2011
[c9]
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Rency S. Varghese, Bin Zhou, Habtom W. Ressom:
Meta-analysis of LC-MS based metabolomic experiments. BIBM Workshops 2011: 157-164
2010
[c8]
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Leepika Tuli, Tsung-Heng Tsai, Rency S. Varghese, Amrita K. Cheema, Habtom W. Ressom:
Using a spike-in experiment to evaluate analysis of LC-MS data. BIBM Workshops 2010: 67-72
2008
[c7]
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Habtom W. Ressom, Rency S. Varghese, Lenka Goldman, Christopher A. Loffredo, Mohamed Abdel-Hamid, Zuzana Kyselova, Yehia Mechref, Milos V. Novotny, Radoslav Goldman:
Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. Pacific Symposium on Biocomputing 2008: 216-227
2006
[c6]
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Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. CIBCB 2006: 1-7
[c5]
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Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Ant Colony Optimization for Biomarker Identification from MALDI-TOF Mass Spectra. EMBC 2006: 4560-4563
2005
[c4]
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Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. CIBCB 2005: 378-384
[c3]
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  - conf/gecco/RessomVSOGPCVALG05
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Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman:
Particle swarm optimization for analysis of mass spectral serum profiles. GECCO 2005: 431-438
2004
[c2]
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  - conf/fuzzIEEE/VargheseMR04
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Rency Susan Varghese, Mohamad T. Musavi, Habtom W. Ressom:
A fuzzy confidence value for DNA bases. FUZZ-IEEE 2004: 347-352
2003
[c1]
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Habtom W. Ressom, Dali Wang, Rency S. Varghese, Robert Reynolds:
Fuzzy logic-based gene regulatory network. FUZZ-IEEE 2003: 1210-1215

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