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2020 – today
- 2024
[i1]Minkyu Jeon, Rishwanth Raghu, Miro Astore, Geoffrey Woollard, Ryan Feathers, Alkin Kaz, Sonya M. Hanson, Pilar Cossio, Ellen D. Zhong:
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM. CoRR abs/2408.05526 (2024)- 2023
- [j11]Lars Dingeldein
, Pilar Cossio, Roberto Covino:
Simulation-based inference of single-molecule force spectroscopy. Mach. Learn. Sci. Technol. 4(2): 25009 (2023) - 2022
- [j10]Rodrigo Ochoa, Pilar Cossio, Thomas Fox:
Protocol for iterative optimization of modified peptides bound to protein targets. J. Comput. Aided Mol. Des. 36(11): 825-835 (2022) - 2021
- [j9]Rodrigo Ochoa, Miguel A. Soler, Alessandro Laio, Pilar Cossio:
PARCE: Protocol for Amino acid Refinement through Computational Evolution. Comput. Phys. Commun. 260: 107716 (2021) - 2020
- [j8]Rodrigo Ochoa, Mikhail D. Magnitov, Roman A. Laskowski, Pilar Cossio, Janet M. Thornton:
An automated protocol for modelling peptide substrates to proteases. BMC Bioinform. 21(1): 586 (2020) - [j7]Isaias Lans, Karen Palacio-Rodríguez, Claudio N. Cavasotto, Pilar Cossio:
Flexi-pharma: a molecule-ranking strategy for virtual screening using pharmacophores from ligand-free conformational ensembles. J. Comput. Aided Mol. Des. 34(10): 1063-1077 (2020) - [j6]Pilar Cossio:
Need for Cross-Validation of Single Particle Cryo-EM. J. Chem. Inf. Model. 60(5): 2413-2418 (2020) - [j5]Isaias Lans, Ernesto Anoz-Carbonell, Karen Palacio-Rodríguez, José Antonio Aínsa, Milagros Medina, Pilar Cossio:
In silico discovery and biological validation of ligands of FAD synthase, a promising new antimicrobial target. PLoS Comput. Biol. 16(8) (2020)
2010 – 2019
- 2019
- [j4]Rodrigo Ochoa, Alessandro Laio, Pilar Cossio:
Predicting the Affinity of Peptides to Major Histocompatibility Complex Class II by Scoring Molecular Dynamics Simulations. J. Chem. Inf. Model. 59(8): 3464-3473 (2019) - 2017
- [j3]Pilar Cossio, David Rohr, Fabio Baruffa, Markus Rampp, Volker Lindenstruth, Gerhard Hummer:
BioEM: GPU-accelerated computing of Bayesian inference of electron microscopy images. Comput. Phys. Commun. 210: 163-171 (2017) - 2013
- [j2]Edoardo Sarti, Stefano Zamuner, Pilar Cossio, Alessandro Laio, Flavio Seno, Antonio Trovato:
BACHSCORE. A tool for evaluating efficiently and reliably the quality of large sets of protein structures. Comput. Phys. Commun. 184(12): 2860-2865 (2013) - 2010
- [j1]Pilar Cossio, Antonio Trovato, Fabio Pietrucci, Flavio Seno, Amos Maritan, Alessandro Laio:
Exploring the Universe of Protein Structures beyond the Protein Data Bank. PLoS Comput. Biol. 6(11) (2010)
Coauthor Index
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