default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDFilip Jagodzinski
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2023
[c34]Changrui Li
, Filip Jagodzinski:
Identifying Impactful Pairs of Insertion Mutations in Proteins. BCB 2023: 99:1-99:8- [c33]Sarah Coffland, Katie Christensen, Filip Jagodzinski, Brian Hutchinson:
RoseNet: Predicting Energy Metrics of Double InDel Mutants Using Deep Learning. BCB 2023: 107:1-107:9 - [i2]Sarah Coffland, Katie Christensen, Filip Jagodzinski, Brian Hutchinson:
RoseNet: Predicting Energy Metrics of Double InDel Mutants Using Deep Learning. CoRR abs/2310.13806 (2023) - 2022
- [c32]Alistair Turcan, Grant Chou, Lilu Martin, Theo Miller, Dylan Thompson, Filip Jagodzinski:
Exhaustive In-silico Simulation of Single Amino Acid Insertion and Deletion Mutations. BIBM 2022: 3498-3503 - 2021
- [j6]Alistair Turcan, Anna Zivkovic, Dylan Thompson, Lorraine Wong, Lauren Johnson, Filip Jagodzinski:
CGRAP: A Web Server for Coarse-Grained Rigidity Analysis of Proteins. Symmetry 13(12): 2401 (2021) - [c31]Muneeba Jilani, Alistair Turcan, Nurit Haspel, Filip Jagodzinski:
Assessing the Effects of Amino Acid Insertion and Deletion Mutations. BIBM 2021: 2511-2518 - [c30]Matthew Lee, Bodi Van Roy, Filip Jagodzinski:
Characterizing the Behavior of Mutated Proteins with EMCAP: the Energy Minimization Curve Analysis Pipeline. BIBM 2021: 2527-2532 - [c29]Quentin Jensen, Filip Jagodzinski, Tanzima Z. Islam:
FILCIO: Application Agnostic I/O Aggregation to Scale Scientific Workflows. COMPSAC 2021: 1587-1592 - [c28]David H. Smith IV, Qiang Hao, Christopher D. Hundhausen, Filip Jagodzinski, Josh Myers-Dean, Kira Jaeger:
Towards Modeling Student Engagement with Interactive Computing Textbooks: An Empirical Study. SIGCSE 2021: 914-920 - 2020
- [c27]Jack Stratton, Michael Albert, Quentin Jensen, Max Ismailov, Filip Jagodzinski, Tanzima Z. Islam:
Towards Aggregation Based I/O Optimization for Scaling Bioinformatics Applications. COMPSAC 2020: 1250-1255
2010 – 2019
- 2019
- [c26]Hunter Read, Dylan Carpenter, Sam Herr, Filip Jagodzinski:
PETRA: Protein-ligand Complex Engineering Through Rigidity Analysis. BCB 2019: 568-573 - [c25]Elizabeth West, Kyle Daling, Courtney Miller, Wes Rosales, Sasa Vukovic, Filip Jagodzinski:
CONSEQUENCES: CONstrained SEQUENCE alignmentS With Multiple User Weights. BCB 2019: 574-579 - [c24]David H. Smith IV, Qiang Hao, Filip Jagodzinski, Yan Liu, Vishal Gupta:
Quantifying the Effects of Prior Knowledge in Entry-Level Programming Courses. CompEd 2019: 30-36 - 2018
- [j5]Richard Olney, Aaron Tuor, Filip Jagodzinski, Brian Hutchinson:
A systematic exploration of ΔΔG cutoff ranges in machine learning models for protein mutation stability prediction. J. Bioinform. Comput. Biol. 16(5): 1840022:1-1840022:19 (2018) - [j4]Michael Siderius, Filip Jagodzinski:
Mutation Sensitivity Maps: Identifying Residue Substitutions That Impact Protein Structure Via a Rigidity Analysis In Silico Mutation Approach. J. Comput. Biol. 25(1): 89-102 (2018) - [c23]Sarah Gunderson, Filip Jagodzinski:
Ensemble Voting Schemes that Improve Machine Learning Models for Predicting the Effects of Protein Mutations. BCB 2018: 211-219 - [c22]Filip Jagodzinski, Brian Y. Chen, Kevin Molloy:
ACM-BCB 2018 Computational Structural Bioinformatics Workshop (CSBW) Chairs' Welcome. BCB 2018: 613-614 - [c21]Nicholas Majeske, Filip Jagodzinski, Brian Hutchinson, Tanzima Z. Islam:
Low Rank Smoothed Sampling Methods for Identifying Impactful Pairwise Mutations. BCB 2018: 681-686 - [c20]Nicholas Majeske, Filip Jagodzinski:
Elucidating Which Pairwise Mutations Affect Protein Stability: An Exhaustive Big Data Approach. COMPSAC (1) 2018: 508-515 - 2017
- [c19]Roshanak Farhoodi, Max Shelbourne, Rebecca Hsieh, Nurit Haspel, Brian Hutchinson, Filip Jagodzinski:
Predicting the Effect of Point Mutations on Protein Structural Stability. BCB 2017: 247-252 - [c18]Erik Andersson, Filip Jagodzinski:
ProMuteHT: A High Throughput Compute Pipeline for Generating Protein Mutants in silico. BCB 2017: 655-660 - [c17]Stephanie Mason, Tim Woods, Brian Y. Chen, Filip Jagodzinski:
Investigating Rigidity Properties of Protein Cavities. BCB 2017: 698-703 - [c16]Elizabeth Brooks, Graham Roberts, Alison Scoville, Filip Jagodzinski:
ModEDI: An extendable software architecture for examining the effects of developmental interactions on evolutionary trajectories. ICCABS 2017: 1-6 - [i1]Joseph Lemley, Filip Jagodzinski, Razvan Andonie:
Big Holes in Big Data: A Monte Carlo Algorithm for Detecting Large Hyper-rectangles in High Dimensional Data. CoRR abs/1704.00683 (2017) - 2016
- [c15]Michael Siderius, Filip Jagodzinski:
Identifying amino acids sensitive to mutations using high-throughput rigidity analysis. BIBM 2016: 1732-1738 - [c14]Joseph Lemley, Filip Jagodzinski, Razvan Andonie:
Big Holes in Big Data: A Monte Carlo Algorithm for Detecting Large Hyper-Rectangles in High Dimensional Data. COMPSAC 2016: 563-571 - [c13]Erik Andersson, Rebecca Hsieh, Howard Szeto, Roshanak Farhoodi, Nurit Haspel, Filip Jagodzinski:
Assessing how multiple mutations affect protein stability using rigid cluster size distributions. ICCABS 2016: 1-6 - 2015
- [c12]Elizabeth Brooks, Alison Scoville, Filip Jagodzinski:
An extensible software infrastructure for testing the evolutionary consequences of developmental interactions. BCB 2015: 557-558 - 2013
- [j3]Filip Jagodzinski, Pamela Clark, Jessica Grant, Tiffany Liu, Samantha Monastra, Ileana Streinu:
Rigidity analysis of protein biological assemblies and periodic crystal structures. BMC Bioinform. 14(S-18): S2 (2013) - [c11]Filip Jagodzinski, Bahar Akbal-Delibas, Nurit Haspel:
An Evolutionary Conservation & Rigidity Analysis Machine Learning Approach for Detecting Critical Protein Residues. BCB 2013: 779 - [c10]Brian Orndorff, Filip Jagodzinski:
A Combined Molecular Dynamics, Rigidity Analysis Approach for Studying Protein Complexes. BCB 2013: 793 - [c9]Emily Flynn, Filip Jagodzinski, Sharon Pamela Santana, Ileana Streinu:
Rigidity and flexibility of protein-nucleic acid complexes. ICCABS 2013: 1-6 - 2012
- [j2]Filip Jagodzinski, Jeanne Hardy, Ileana Streinu:
Using Rigidity Analysis to Probe Mutation-induced Structural Changes in proteins. J. Bioinform. Comput. Biol. 10(3) (2012) - [c8]Filip Jagodzinski, Ileana Streinu:
Towards biophysical validation of constraint modeling for rigidity analysis of proteins. BCB 2012: 408-413 - [c7]Emily Flynn, Filip Jagodzinski, Ileana Streinu:
Towards sequence-based DNA flexibility analysis. BCB 2012: 607-609 - [c6]Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel:
Towards a hybrid method for detecting critical protein residues. BIBM Workshops 2012: 82-85 - [c5]Bahar Akbal-Delibas, Filip Jagodzinski, Nurit Haspel:
Combining conservation and rigidity methods to detect critical residues in proteins. BIBM Workshops 2012: 940 - [c4]Pamela Clark, Jessica Grant, Samantha Monastra, Filip Jagodzinski, Ileana Streinu:
Periodic rigidity of protein crystal structures. ICCABS 2012: 1-6 - 2011
- [j1]Naomi Fox, Filip Jagodzinski, Yang Li, Ileana Streinu:
KINARI-Web: a server for protein rigidity analysis. Nucleic Acids Res. 39(Web-Server-Issue): 177-183 (2011) - [c3]Filip Jagodzinski, Jeanne Hardy, Ileana Streinu:
Using rigidity analysis to probe mutation-induced structural changes in proteins. BIBM Workshops 2011: 432-437
2000 – 2009
- 2007
- [c2]Filip Jagodzinski, Oliver Brock:
Towards a mechanistic view of protein motion. CDC 2007: 4557-4562 - 2003
- [c1]Marcos André Gonçalves, Ganesh Panchanathan, Unnikrishnan Ravindranathan, Aaron Krowne, Edward A. Fox, Filip Jagodzinski, Lillian N. Cassel:
The XML Log Standard for Digital Libraries: Analysis, Evolution, and Deployment. JCDL 2003: 312-314
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:06 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
