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2020 – today
- 2023
[j7]Clayton W. Kosonocky
, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington:
Using alternative SMILES representations to identify novel functional analogues in chemical similarity vector searches. Patterns 4(12): 100865 (2023)- [c10]Tianlong Chen, Chengyue Gong, Daniel Jesus Diaz, Xuxi Chen, Jordan Tyler Wells, Qiang Liu, Zhangyang Wang, Andrew D. Ellington, Alex Dimakis, Adam R. Klivans:
HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing. ICLR 2023 - [i2]Clayton W. Kosonocky, Aaron L. Feller, Claus O. Wilke, Andrew D. Ellington:
Prompt Engineering for Transformer-based Chemical Similarity Search Identifies Structurally Distinct Functional Analogues. CoRR abs/2305.16330 (2023) - [i1]Clayton W. Kosonocky, Claus O. Wilke, Edward M. Marcotte, Andrew D. Ellington:
Mining Patents with Large Language Models Demonstrates Congruence of Functional Labels and Chemical Structures. CoRR abs/2309.08765 (2023)
2010 – 2019
- 2019
- [j6]Gwendolyn M. Stovall, Vincent Huynh, Shelly Engelman, Andrew D. Ellington:
Aptamers in Education: Undergraduates Make Aptamers and Acquire 21st Century Skills Along the Way. Sensors 19(15): 3270 (2019) - 2017
- [c9]Boya Wang, Chris Thachuk, Andrew D. Ellington, David Soloveichik:
The Design Space of Strand Displacement Cascades with Toehold-Size Clamps. DNA 2017: 64-81 - 2014
- [j5]Peter B. Allen, Xi Chen, Zack B. Simpson, Andrew D. Ellington:
Modeling scalable pattern generation in DNA reaction networks. Nat. Comput. 13(4): 583-595 (2014) - 2012
- [c8]Peter B. Allen, Xi Chen, Zack B. Simpson, Andrew D. Ellington:
Modeling Scalable Pattern Generation in DNA Reaction Networks. ALIFE 2012 - [c7]Arun Manickam, Rituraj Singh, Nicholas Wood, Bingling Li, Andrew D. Ellington, Arjang Hassibi:
A fully-electronic charge-based DNA sequencing CMOS biochip. VLSIC 2012: 126-127 - 2010
- [j4]Arun Manickam, Aaron Chevalier, Mark W. McDermott, Andrew D. Ellington, Arjang Hassibi:
A CMOS Electrochemical Impedance Spectroscopy (EIS) Biosensor Array. IEEE Trans. Biomed. Circuits Syst. 4(6): 379-390 (2010) - [c6]Arun Manickam, Aaron Chevalier, Mark W. McDermott, Andrew D. Ellington, Arjang Hassibi:
A CMOS electrochemical impedance spectroscopy biosensor array for label-free biomolecular detection. ISSCC 2010: 130-131 - [c5]Eric A. Davidson, Thomas Van Blarcom, Matthew Levy, Andrew D. Ellington:
Emulsion Based Selection of T7 Promoters of Varying Activity. Pacific Symposium on Biocomputing 2010: 433-443
2000 – 2009
- 2009
- [j3]Xi Chen, Andrew D. Ellington:
Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes. PLoS Comput. Biol. 5(12) (2009) - [c4]Byungchul Jang, Peiyan Cao, Aaron Chevalier, Andrew D. Ellington, Arjang Hassibi:
A CMOS fluorescent-based biosensor microarray. ISSCC 2009: 436-437 - 2008
- [c3]Peng Yu, Xi Chen, David Z. Pan, Andrew D. Ellington:
Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological Clock. BIBM 2008: 329-334 - 2004
- [j2]Jennifer F. Lee, Jay R. Hesselberth, Lauren Ancel Meyers, Andrew D. Ellington:
Aptamer Database. Nucleic Acids Res. 32(Database-Issue): 95-100 (2004) - [j1]Michael M. Hoffman, Maksim A. Khrapov, J. Colin Cox, Jianchao Yao, Lingnan Tong, Andrew D. Ellington:
AANT: the Amino Aciduchleotide Interaction Database. Nucleic Acids Res. 32(Database-Issue): 174-181 (2004)
1990 – 1999
- 1999
- [c2]Michael P. Robertson, Jay R. Hesselberth, J. Colin Cox, Andrew D. Ellington:
Designing and selecting components for nucleic acid computers. DNA Based Computers 1999: 183-193 - 1997
- [c1]Andrew D. Ellington, Michael P. Robertson, Ken D. James, J. Colin Cox:
Strategies for DNA computing. DNA Based Computers 1997: 173-184
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