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ORCIDMario Medvedovic
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Journal Articles
- 2022
[j16]John Erol Evangelista
, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan:
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022)- 2020
- [j15]Yan Ren, Siva Sivaganesan, Nicholas A. Clark, Lixia Zhang, Jacek Biesiada, Wen Niu, David R. Plas, Mario Medvedovic:
Predicting mechanism of action of cellular perturbations with pathway activity signatures. Bioinform. 36(18): 4781-4788 (2020) - [j14]Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke, Alexander Lachmann, John Erol Evangelista, Avi Ma'ayan, Mario Medvedovic, Stephan C. Schürer:
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Nucleic Acids Res. 48(Database-Issue): D431-D439 (2020) - [j13]Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller:
piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Res. 48(Webserver-Issue): W85-W93 (2020) - 2018
- [j12]Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre, Kathleen M. Jagodnik, Lily Wang, Sherry L. Jenkins, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi, Marcin Pilarczyk, Nicholas A. Clark, Behrouz Shamsaei, Jarek Meller, Juozas Vasiliauskas, John Reichard, Mario Medvedovic, Avi Ma'ayan, Ajay Pillai, Stephan C. Schürer:
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. Nucleic Acids Res. 46(Database-Issue): D558-D566 (2018) - 2013
- [j11]Jing Chen, Zhen Hu, Mukta Phatak, John Reichard, Johannes M. Freudenberg, Siva Sivaganesan, Mario Medvedovic:
Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules. PLoS Comput. Biol. 9(9) (2013) - 2011
- [j10]Johannes M. Freudenberg, Siva Sivaganesan, Mukta Phatak, Kaustubh Shinde, Mario Medvedovic:
Generalized random set framework for functional enrichment analysis using primary genomics datasets. Bioinform. 27(1): 70-77 (2011) - [j9]Vineet K. Joshi, Johannes M. Freudenberg, Zhen Hu, Mario Medvedovic:
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results. Source Code Biol. Medicine 6: 3 (2011) - 2010
- [j8]Johannes M. Freudenberg, Siva Sivaganesan, Michael Wagner, Mario Medvedovic:
A semi-parametric Bayesian model for unsupervised differential co-expression analysis. BMC Bioinform. 11: 234 (2010) - 2009
- [j7]Maureen A. Sartor, George D. Leikauf, Mario Medvedovic:
LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data. Bioinform. 25(2): 211-217 (2009) - [j6]Johannes M. Freudenberg, Vineet K. Joshi, Zhen Hu, Mario Medvedovic:
CLEAN: CLustering Enrichment ANalysis. BMC Bioinform. 10 (2009) - 2007
- [j5]Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic:
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data. BMC Bioinform. 8 (2007) - 2006
- [j4]Xiangdong Liu, Siva Sivaganesan, Ka Yee Yeung, Junhai Guo, Roger Eugene Bumgarner, Mario Medvedovic:
Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset. Bioinform. 22(14): 1737-1744 (2006) - [j3]Maureen A. Sartor, Craig R. Tomlinson, Scott C. Wesselkamper, Siva Sivaganesan, George D. Leikauf, Mario Medvedovic:
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments. BMC Bioinform. 7: 538 (2006) - 2004
- [j2]Mario Medvedovic, Ka Yee Yeung, Roger Eugene Bumgarner:
Bayesian mixture model based clustering of replicated microarray data. Bioinform. 20(8): 1222-1232 (2004) - 2002
- [j1]Mario Medvedovic, Siva Sivaganesan:
Bayesian infinite mixture model based clustering of gene expression profiles. Bioinform. 18(9): 1194-1206 (2002)
Conference and Workshop Papers
- 2010
- [c2]Zhen Hu, Siva Sivaganesan, Mario Medvedovic:
Prior Information Based Bayesian Infinite Mixture Model. ISAIM 2010 - 2004
- [c1]Mario Medvedovic, Junhai Guo:
Bayesian Model-Averaging in Unsupervised Learning From Microarray Data. BIOKDD 2004: 40-47
Coauthor Index
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