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Ruth Dannenfelser
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2020 – today
- 2024
- [c2]Lechuan Li, Ruth Dannenfelser, Charlie Cruz, Vicky Yao:
Enhancing Gene Set Analysis in Embedding Spaces: A Novel Best-Match Approach. RECOMB 2024: 396-399 - 2023
- [j9]Lechuan Li, Ruth Dannenfelser, Yu Zhu, Nathaniel Hejduk, Santiago Segarra, Vicky Yao:
Joint embedding of biological networks for cross-species functional alignment. Bioinform. 39(9) (2023) - [c1]Ruth Dannenfelser, Jeffrey Zhong, Ran Zhang, Vicky Yao:
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical Texts. NeurIPS 2023 - [i1]Ruth Dannenfelser, Jeffrey Zhong, Ran Zhang, Vicky Yao:
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical Texts. CoRR abs/2309.01812 (2023) - 2020
- [b1]Ruth Dannenfelser:
Data-Driven Approaches and Systems to Interrogate Complex Disease. Princeton University, USA, 2020
2010 – 2019
- 2013
- [j8]Huilei Xu, Caroline Baroukh, Ruth Dannenfelser, Edward Y. Chen, Christopher M. Tan, Yan Kou, Yujin E. Kim, Ihor Lemischka, Avi Ma'ayan:
ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells. Database J. Biol. Databases Curation 2013 (2013) - [j7]Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan:
Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinform. 29(15): 1872-1878 (2013) - 2012
- [j6]Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan:
Genes2FANs: connecting genes through functional association networks. BMC Bioinform. 13: 156 (2012) - [j5]Neil R. Clark, Ruth Dannenfelser, Christopher M. Tan, Michael E. Komosinski, Avi Ma'ayan:
Sets2Networks: network inference from repeated observations of sets. BMC Syst. Biol. 6: 89 (2012) - 2011
- [j4]Ruth Dannenfelser, Alexander Lachmann, Mariola Szenk, Avi Ma'ayan:
FNV: light-weight flash-based network and pathway viewer. Bioinform. 27(8): 1181-1182 (2011) - [j3]Amin R. Mazloom, Ruth Dannenfelser, Neil R. Clark, Arsen V. Grigoryan, Kathryn M. Linder, Timothy Cardozo, Julia C. Bond, Aislyn D. W. Boran, Ravi Iyengar, Anna Malovannaya, Rainer B. Lanz, Avi Ma'ayan:
Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes. PLoS Comput. Biol. 7(12) (2011) - [j2]Caroline Baroukh, Sherry L. Jenkins, Ruth Dannenfelser, Avi Ma'ayan:
Genes2WordCloud: a quick way to identify biological themes from gene lists and free text. Source Code Biol. Medicine 6: 15 (2011) - 2010
- [j1]Steven N. Steinway, Ruth Dannenfelser, Christopher D. Laucius, James E. Hayes, Sudhir Nayak:
JCoDA: a tool for detecting evolutionary selection. BMC Bioinform. 11: 284 (2010)
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