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ORCIDNeil R. Clark
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2010 – 2019
- 2018
[c3]Rachel Hodos, Ping Zhang, Hao-Chih Lee, Qiaonan Duan, Zichen Wang, Neil R. Clark, Avi Ma'ayan, Fei Wang, Brian A. Kidd, Jianying Hu, David A. Sontag, Joel Dudley:
Cell-specific prediction and application of drug-induced gene expression . PSB 2018: 32-43- 2016
- [j8]Zichen Wang, Neil R. Clark, Avi Ma'ayan
:
Drug-induced adverse events prediction with the LINCS L1000 data. Bioinform. 32(15): 2338-2345 (2016) - [i1]Avi Ma'ayan, Neil R. Clark:
Large Collection of Diverse Gene Set Search Queries Recapitulate Known Protein-Protein Interactions and Gene-Gene Functional Associations. CoRR abs/1601.01653 (2016) - 2015
- [j7]Zichen Wang, Neil R. Clark, Avi Ma'ayan:
Dynamics of the discovery process of protein-protein interactions from low content studies. BMC Syst. Biol. 9: 26 (2015) - [c2]Neil R. Clark, Maciej Szymkiewicz, Zichen Wang, Caroline D. Monteiro, Matthew R. Jones, Avi Ma'ayan:
Principle Angle Enrichment Analysis (PAEA): Dimensionally reduced multivariate gene set enrichment analysis tool. BIBM 2015: 256-262 - 2014
- [j6]Neil R. Clark, Kevin S. Hu, Axel S. Feldmann, Yan Kou, Edward Y. Chen, Qiaonan Duan, Avi Ma'ayan:
The characteristic direction: a geometrical approach to identify differentially expressed genes. BMC Bioinform. 15: 79 (2014) - 2013
- [j5]Christopher M. Tan, Edward Y. Chen, Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan:
Network2Canvas: network visualization on a canvas with enrichment analysis. Bioinform. 29(15): 1872-1878 (2013) - [j4]Edward Y. Chen, Christopher M. Tan, Yan Kou, Qiaonan Duan, Zichen Wang, Gabriela Vaz Meirelles, Neil R. Clark, Avi Ma'ayan:
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinform. 14: 128 (2013) - [c1]Yan Kou, Edward Y. Chen, Neil R. Clark, Qiaonan Duan, Christopher M. Tan, Avi Ma'ayan:
ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome. CD-ARES 2013: 416-430 - 2012
- [j3]Ruth Dannenfelser, Neil R. Clark, Avi Ma'ayan:
Genes2FANs: connecting genes through functional association networks. BMC Bioinform. 13: 156 (2012) - [j2]Neil R. Clark, Ruth Dannenfelser, Christopher M. Tan, Michael E. Komosinski, Avi Ma'ayan:
Sets2Networks: network inference from repeated observations of sets. BMC Syst. Biol. 6: 89 (2012) - 2011
- [j1]Amin R. Mazloom, Ruth Dannenfelser, Neil R. Clark, Arsen V. Grigoryan, Kathryn M. Linder, Timothy Cardozo, Julia C. Bond, Aislyn D. W. Boran, Ravi Iyengar, Anna Malovannaya, Rainer B. Lanz, Avi Ma'ayan:
Recovering Protein-Protein and Domain-Domain Interactions from Aggregation of IP-MS Proteomics of Coregulator Complexes. PLoS Comput. Biol. 7(12) (2011)
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