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2020 – today
- 2024
[j15]Valeriia Sherina, Helene R. McMurray, Winslow Powers, Hartmut Land, Tanzy M. T. Love, Matthew N. McCall:
Correction: Multiple imputation and direct estimation for qPCR data with non-detects. BMC Bioinform. 25(1): 63 (2024)- 2021
- [j14]Yun Zhang
, Jonavelle Cuerdo, Marc K. Halushka, Matthew N. McCall:
The effect of tissue composition on gene co-expression. Briefings Bioinform. 22(1): 127-139 (2021) - [j13]Benjamin Hsu, Valeriia Sherina, Matthew N. McCall:
Autoregressive modeling and diagnostics for qPCR amplification. Bioinform. 36(22-23): 5386-5391 (2021) - [j12]Matthew N. McCall, Chin-Yi Chu, Lu Wang, Lauren Benoodt, Juilee Thakar, Anthony Corbett, Jeanne Holden-Wiltse, Christopher Slaunwhite, Alex Grier, Steven R. Gill, Ann R. Falsey, David J. Topham, Mary T. Caserta, Edward E. Walsh, Xing Qiu, Thomas J. Mariani:
A systems genomics approach uncovers molecular associates of RSV severity. PLoS Comput. Biol. 17(12) (2021) - 2020
- [j11]Valeriia Sherina, Helene R. McMurray, Winslow Powers, Hartmut Land, Tanzy M. T. Love, Matthew N. McCall:
Multiple imputation and direct estimation for qPCR data with non-detects. BMC Bioinform. 21(1): 545 (2020)
2010 – 2019
- 2017
- [i1]Lauren Kemperman, Matthew N. McCall:
miRcomp-Shiny: Interactive assessment of qPCR-based microRNA quantification and quality control algorithms. F1000Research 6: 2046- (2017) - 2016
- [j10]Matthew N. McCall, Alexander S. Baras, Alexander Crits-Christoph, Roxann Ingersoll, Melissa A. McAlexander, Kenneth W. Witwer, Marc K. Halushka:
A benchmark for microRNA quantification algorithms using the OpenArray platform. BMC Bioinform. 17: 138 (2016) - 2014
- [j9]Matthew N. McCall, Helene R. McMurray, Hartmut Land, Anthony Almudevar:
On non-detects in qPCR data. Bioinform. 30(16): 2310-2316 (2014) - [j8]Matthew N. McCall, Harris A. Jaffee, Susan J. Zelisko, Neeraj Sinha, Guido J. E. K. Hooiveld, Rafael A. Irizarry, Michael J. Zilliox:
The Gene Expression Barcode 3.0: improved data processing and mining tools. Nucleic Acids Res. 42(Database-Issue): 938-943 (2014) - 2013
- [j7]George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji:
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. Bioinform. 29(9): 1182-1189 (2013) - 2012
- [j6]Matthew N. McCall, Anthony Almudevar:
Affymetrix GeneChip microarray preprocessing for multivariate analyses. Briefings Bioinform. 13(5): 536-546 (2012) - [j5]Matthew N. McCall, Harris A. Jaffee, Rafael A. Irizarry:
fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays. Bioinform. 28(23): 3153-3154 (2012) - [j4]Héctor Corrada Bravo, Vasyl Pihur, Matthew N. McCall, Rafael A. Irizarry, Jeffrey T. Leek:
Gene expression anti-profiles as a basis for accurate universal cancer signatures. BMC Bioinform. 13: 272 (2012) - 2011
- [j3]Matthew N. McCall, Peter N. Murakami, Margus Lukk, Wolfgang Huber, Rafael A. Irizarry:
Assessments of Affymetrix GeneChip Microarray Quality for Laboratories and Single Samples. BMC Bioinform. 12: 137 (2011) - [j2]Matthew N. McCall, Rafael A. Irizarry:
Thawing Frozen Robust Multi-array Analysis (fRMA). BMC Bioinform. 12: 369 (2011) - [j1]Matthew N. McCall, Karan Uppal, Harris A. Jaffee, Michael J. Zilliox, Rafael A. Irizarry:
The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes. Nucleic Acids Res. 39(Database-Issue): 1011-1015 (2011)
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