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2020 – today
- 2022
[j14]Xin Wei, Ziyi Li, Hongkai Ji, Hao Wu
:
EDClust: an EM-MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing. Bioinform. 38(10): 2692-2699 (2022)- 2021
- [j13]Sarthak Sinha, Ansuman T. Satpathy, Weiqiang Zhou, Hongkai Ji, Jo A. Stratton, Arzina Jaffer, Nizar Bahlis, Sorana Morrissy, Jeff A. Biernaskie:
Profiling Chromatin Accessibility at Single-cell Resolution. Genom. Proteom. Bioinform. 19(2): 172-190 (2021)
2010 – 2019
- 2017
- [j12]Zhicheng Ji, Weiqiang Zhou, Hongkai Ji:
Single-cell regulome data analysis by SCRAT. Bioinform. 33(18): 2930-2932 (2017) - 2016
- [j11]Jie Wang, Shuli Xia, Brian Arand, Heng Zhu, Raghu Machiraju, Kun Huang, Hongkai Ji, Jiang Qian:
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes. PLoS Comput. Biol. 12(4) (2016) - 2013
- [j10]George Wu, Jason T. Yustein, Matthew N. McCall, Michael J. Zilliox, Rafael A. Irizarry, Karen Zeller, Chi V. Dang, Hongkai Ji:
ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data. Bioinform. 29(9): 1182-1189 (2013) - [j9]George Wu, Hongkai Ji:
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking. BMC Bioinform. 14: 188 (2013) - [j8]Andrew E. Jaffe, John D. Storey, Hongkai Ji, Jeffrey T. Leek:
Gene set bagging for estimating the probability a statistically significant result will replicate. BMC Bioinform. 14: 360 (2013) - 2012
- [j7]Yingying Wei, Xia Li, Qianfei Wang, Hongkai Ji:
iASeq: integrating multiple chip-seq datasets for detecting allele-specific binding. BMC Bioinform. 13(S-18): A6 (2012) - 2011
- [j6]Li Chen, George Wu, Hongkai Ji:
hmChIP: a database and web server for exploring publicly available human and mouse ChIP-seq and ChIP-chip data. Bioinform. 27(10): 1447-1448 (2011) - [p1]Hongkai Ji:
Computational Analysis of ChIP-chip Data. Handbook of Statistical Bioinformatics 2011: 257-282 - 2010
- [j5]Hao Wu, Hongkai Ji:
JAMIE: joint analysis of multiple ChIP-chip experiments. Bioinform. 26(15): 1864-1870 (2010)
2000 – 2009
- 2009
- [j4]Jennifer Toolan Judy, Hongkai Ji:
TileProbe: modeling tiling array probe effects using publicly available data. Bioinform. 25(18): 2369-2375 (2009) - 2006
- [j3]Ryung S. Kim, Hongkai Ji, Wing Hung Wong:
An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse. BMC Bioinform. 7: 44 (2006) - 2005
- [j2]Hongkai Ji, Wing Hung Wong:
TileMap: create chromosomal map of tiling array hybridizations. Bioinform. 21(18): 3629-3636 (2005) - 2001
- [j1]Hongkai Ji, Qing Zhou, Fang Wen, Huiyu Xia, Xin Lu, Yanda Li:
AsMamDB: an alternative splice database of mammals. Nucleic Acids Res. 29(1): 260-263 (2001)
Coauthor Index
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