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ORCIDErnesto Pérez-Rueda
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Journal Articles
- 2022
[j12]Gustavo Sganzerla Martinez
, Ernesto Pérez-Rueda, Sharmilee Sarkar, Aditya Kumar, Scheila de Avila e Silva:
Machine learning and statistics shape a novel path in archaeal promoter annotation. BMC Bioinform. 23(1): 171 (2022)- 2016
- [j11]Socorro Gama-Castro, Heladia Salgado, Alberto Santos-Zavaleta, Daniela Ledezma-Tejeida, Luis Muñiz-Rascado, Jair Santiago García-Sotelo, Kevin Alquicira-Hernández, Irma Martínez-Flores, Lucia Pannier, Jaime Abraham Castro-Mondragón, Alejandra Medina-Rivera, Hilda Solano-Lira, César Bonavides-Martínez, Ernesto Pérez-Rueda, Shirley Alquicira-Hernández, Liliana Porrón-Sotelo, Alejandra López-Fuentes, Anastasia Hernández-Koutoucheva, Victor del Moral-Chávez, Fabio Rinaldi, Julio Collado-Vides:
RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond. Nucleic Acids Res. 44(Database-Issue): 133-143 (2016) - 2015
- [j10]Dagoberto Armenta-Medina, Ernesto Pérez-Rueda:
Hybrid approaches for the detection of networks of critical residues involved in functional motions in protein families. BMC Bioinform. 16(S-3): A8 (2015) - [j9]Ernesto Pérez-Rueda, Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Yalbi I. Balderas-Martínez, Gabriel Moreno-Hagelsieb:
The functional landscape bound to the transcription factors of Escherichia coli K-12. Comput. Biol. Chem. 58: 93-103 (2015) - [j8]Ernesto Pérez-Rueda, J. Antonio Ibarra:
Distribution of putative xenogeneic silencers in prokaryote genomes. Comput. Biol. Chem. 58: 167-172 (2015) - 2013
- [j7]Julio A. Freyre-González, Alejandra M. Manjarrez-Casas, Enrique Merino, Mario Martinez-Nuñez, Ernesto Pérez-Rueda, Rosa-María Gutiérrez-Ríos:
Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis. BMC Syst. Biol. 7: 127 (2013) - 2011
- [j6]Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Pérez-Rueda:
New insights on gene regulation in archaea. Comput. Biol. Chem. 35(6): 341-346 (2011) - 2009
- [j5]Sarath Chandra Janga, Ernesto Pérez-Rueda:
Plasticity of transcriptional machinery in bacteria is increased by the repertoire of regulatory families. Comput. Biol. Chem. 33(4): 261-268 (2009) - 2007
- [j4]Armando Hernandez-Mendoza, Carmen Quinto, Lorenzo Segovia, Ernesto Pérez-Rueda:
Ligand-binding prediction in the resistance-nodulation-cell division (RND) proteins. Comput. Biol. Chem. 31(2): 115-123 (2007) - 2005
- [j3]Abel D. González, Vladimir Espinosa Angarica, Ana Tereza Ribeiro de Vasconcelos, Ernesto Pérez-Rueda, Julio Collado-Vides:
TRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomes. Nucleic Acids Res. 33(Database-Issue): 98-102 (2005) - 2004
- [j2]Ernesto Pérez-Rueda, Julio Collado-Vides, Lorenzo Segovia:
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Comput. Biol. Chem. 28(5-6): 341-350 (2004) - 2001
- [j1]Heladia Salgado, Alberto Santos-Zavaleta, Socorro Gama-Castro, Dulce Millán-Zárate, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Ernesto Pérez-Rueda, César Bonavides-Martínez, Julio Collado-Vides:
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res. 29(1): 72-74 (2001)
Conference and Workshop Papers
- 2002
- [c1]Julio Collado-Vides, Gabriel Moreno-Hagelsieb, Ernesto Pérez-Rueda, Heladia Salgado, Araceli M. Huerta, Rosa María Gutiérrez, David A. Rosenblueth, Andrés Christen, Esperanza Benítez-Bellón, Arturo Medrano-Soto, Socorro Gama-Castro, Alberto Santos-Zavaleta, César Bonavides-Martínez, Edgar Díaz-Peredo, Fabiola Sánchez-Solano, Dulce María Millá:
Genomics of Gene Regulation: The View from Escherichia coli. Gene Regulations and Metabolism 2002: 103-128
Coauthor Index
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