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Alan M. Moses
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2020 – today
- 2022
- [j18]Alex X. Lu, Amy X. Lu, Iva Pritisanac, Taraneh Zarin, Julie D. Forman-Kay, Alan M. Moses:
Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning. PLoS Comput. Biol. 18(6) (2022) - [j17]Nirvana Nursimulu, Alan M. Moses, John Parkinson:
Architect: A tool for aiding the reconstruction of high-quality metabolic models through improved enzyme annotation. PLoS Comput. Biol. 18(9): 1010452 (2022) - 2021
- [i5]Tianyu Lu, Alex X. Lu, Alan M. Moses:
Random Embeddings and Linear Regression can Predict Protein Function. CoRR abs/2104.14661 (2021) - [i4]Stanley Bryan Z. Hua, Alex X. Lu, Alan M. Moses:
CytoImageNet: A large-scale pretraining dataset for bioimage transfer learning. CoRR abs/2111.11646 (2021) - 2020
- [i3]Rohit Saha, Abenezer Teklemariam, Ian Shenyen Hsu, Alan M. Moses:
W-Cell-Net: Multi-frame Interpolation of Cellular Microscopy Videos. CoRR abs/2005.06684 (2020) - [i2]Amy X. Lu, Alex X. Lu, Alan M. Moses:
Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning. CoRR abs/2012.13475 (2020)
2010 – 2019
- 2019
- [j16]Tahmid F. Mehdi, Gurdeep Singh, Jennifer A Mitchell, Alan M. Moses:
Variational infinite heterogeneous mixture model for semi-supervised clustering of heart enhancers. Bioinform. 35(18): 3232-3239 (2019) - [j15]Alex X. Lu, Taraneh Zarin, Ian Shenyen Hsu, Alan M. Moses:
YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells. Bioinform. 35(21): 4525-4527 (2019) - [j14]Iva Pritisanac, Robert M. Vernon, Alan M. Moses, Julie D. Forman-Kay:
Entropy and Information within Intrinsically Disordered Protein Regions. Entropy 21(7): 662 (2019) - [j13]Alex X. Lu, Oren Z. Kraus, Sam Cooper, Alan M. Moses:
Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting. PLoS Comput. Biol. 15(9) (2019) - [c3]Alex X. Lu, Amy X. Lu, Wiebke Schormann, Marzyeh Ghassemi, David W. Andrews, Alan M. Moses:
The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers. NeurIPS 2019: 1852-1860 - [i1]Alex X. Lu, Amy X. Lu, Wiebke Schormann, David W. Andrews, Alan M. Moses:
The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers. CoRR abs/1906.07282 (2019) - 2018
- [j12]Muluye E. Liku, Elizabeth-Ann Legere, Alan M. Moses:
NoLogo: a new statistical model highlights the diversity and suggests new classes of Crm1-dependent nuclear export signals. BMC Bioinform. 19(1): 65:1-65:15 (2018) - [j11]Bob Strome, Ian Shenyen Hsu, Mitchell Li Cheong Man, Taraneh Zarin, Alex N. Nguyen Ba, Alan M. Moses:
Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity. BMC Syst. Biol. 12(1): 75:1-75:13 (2018) - 2015
- [j10]Louis-François Handfield, Bob Strome, Yolanda T. Chong, Alan M. Moses:
Local statistics allow quantification of cell-to-cell variability from high-throughput microscope images. Bioinform. 31(6): 940-947 (2015) - 2014
- [j9]Alex N. Nguyen Ba, Bob Strome, Jun Jie Hua, Jonathan Desmond, Isabelle Gagnon-Arsenault, Eric L. Weiss, Christian R. Landry, Alan M. Moses:
Detecting Functional Divergence after Gene Duplication through Evolutionary Changes in Posttranslational Regulatory Sequences. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j8]Louis-François Handfield, Yolanda T. Chong, Jibril Simmons, Brenda J. Andrews, Alan M. Moses:
Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins. PLoS Comput. Biol. 9(6) (2013) - 2012
- [j7]Andy C. W. Lai, Alex N. Nguyen Ba, Alan M. Moses:
Predicting kinase substrates using conservation of local motif density. Bioinform. 28(7): 962-969 (2012) - [j6]Amin Zia, Alan M. Moses:
Towards a theoretical understanding of false positives in DNA motif finding. BMC Bioinform. 13: 151 (2012) - 2011
- [j5]Amin Zia, Alan M. Moses:
Ranking insertion, deletion and nonsense mutations based on their effect on genetic information. BMC Bioinform. 12: 299 (2011) - [j4]Christos Josephides, Alan M. Moses:
Modeling the evolution of a classic genetic switch. BMC Syst. Biol. 5: 24 (2011)
2000 – 2009
- 2009
- [j3]Alex N. Nguyen Ba, Anastassia Pogoutse, Nicholas Provart, Alan M. Moses:
NLStradamus: a simple Hidden Markov Model for nuclear localization signal prediction. BMC Bioinform. 10 (2009) - 2006
- [j2]Daniel A. Pollard, Alan M. Moses, Venky N. Iyer, Michael B. Eisen:
Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments. BMC Bioinform. 7: 376 (2006) - [j1]Alan M. Moses, Daniel A. Pollard, David A. Nix, Venky N. Iyer, Xiaoyong Li, Mark D. Biggin, Michael B. Eisen:
Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila. PLoS Comput. Biol. 2(10) (2006) - 2004
- [c2]Alan M. Moses, Derek Y. Chiang, Michael B. Eisen:
Phylogenetic Motif Detection by Expectation-Maximization on Evolutionary Mixtures. Pacific Symposium on Biocomputing 2004: 324-335 - 2003
- [c1]Derek Y. Chiang, Alan M. Moses, Manolis Kamvysselis, Eric S. Lander, Michael B. Eisen:
Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts. RECOMB 2003: 84-93
Coauthor Index
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