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Stanislaw Dunin-Horkawicz
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2020 – today
- 2023
- [j13]Kamil Kaminski, Jan Ludwiczak
, Kamil Pawlicki, Vikram Alva
, Stanislaw Dunin-Horkawicz
:
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinform. 39(10) (2023) - 2022
- [j12]Kamil Kaminski, Jan Ludwiczak
, Maciej Jasinski, Adriana Bukala, Rafal Madaj
, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz
:
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings Bioinform. 23(1) (2022) - 2021
- [j11]Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto
, Jan Ludwiczak
, Stanislaw Dunin-Horkawicz
:
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinform. 36(22-23): 5368-5376 (2021) - [j10]Vasilina Zayats
, Agata P. Perlinska
, Aleksandra I. Jarmolinska
, Borys Jastrzebski
, Stanislaw Dunin-Horkawicz
, Joanna I. Sulkowska
:
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j9]Matthew Merski
, Krzysztof Mlynarczyk
, Jan Ludwiczak
, Jakub Skrzeczkowski
, Stanislaw Dunin-Horkawicz
, Maria W. Górna
:
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinform. 21(1): 179 (2020)
2010 – 2019
- 2019
- [j8]Martyna Nowacka
, Pietro Boccaletto
, Elzbieta Jankowska, Tomasz Jarzynka, Janusz M. Bujnicki, Stanislaw Dunin-Horkawicz
:
RRMdb - an evolutionary-oriented database of RNA recognition motif sequences. Database J. Biol. Databases Curation 2019: bay148 (2019) - [j7]Jan Ludwiczak
, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva
, Stanislaw Dunin-Horkawicz
:
DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinform. 35(16): 2790-2795 (2019) - 2018
- [j6]Pietro Boccaletto
, Marcin Magnus
, Catarina Almeida
, Adriana Zyla, Astha Astha, Radoslaw Pluta
, Blazej Baginski, Elzbieta Jankowska, Stanislaw Dunin-Horkawicz
, Tomasz K. Wirecki
, Michal J. Boniecki
, Filip Stefaniak
, Janusz M. Bujnicki:
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Nucleic Acids Res. 46(Database-Issue): D202-D205 (2018) - 2015
- [j5]Magdalena A. Machnicka
, Katarzyna H. Kaminska
, Stanislaw Dunin-Horkawicz
, Janusz M. Bujnicki:
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. BMC Bioinform. 16: 336:1-336:16 (2015) - 2013
- [j4]Magdalena A. Machnicka
, Kaja Milanowska
, Okan Osman Oglou, Elzbieta Purta
, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz
, Kristian Rother, Mark Helm
, Janusz M. Bujnicki, Henri Grosjean:
MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Res. 41(Database-Issue): 262-267 (2013)
2000 – 2009
- 2009
- [j3]Anna Czerwoniec, Stanislaw Dunin-Horkawicz
, Elzbieta Purta
, Katarzyna H. Kaminska
, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother:
MODOMICS: a database of RNA modification pathways, update 2008. Nucleic Acids Res. 37(Database-Issue): 118-121 (2009) - 2007
- [j2]Karolina L. Tkaczuk, Stanislaw Dunin-Horkawicz
, Elzbieta Purta
, Janusz M. Bujnicki:
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinform. 8 (2007) - 2006
- [j1]Stanislaw Dunin-Horkawicz
, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki:
MODOMICS: a database of RNA modification pathways. Nucleic Acids Res. 34(Database-Issue): 145-149 (2006)
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