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ORCIDStanislaw Dunin-Horkawicz
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Journal Articles
- 2023
[j13]Kamil Kaminski, Jan Ludwiczak
, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz:
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinform. 39(10) (2023)- 2022
- [j12]Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz:
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings Bioinform. 23(1) (2022) - 2021
- [j11]Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz:
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinform. 36(22-23): 5368-5376 (2021) - [j10]Vasilina Zayats, Agata P. Perlinska, Aleksandra I. Jarmolinska, Borys Jastrzebski, Stanislaw Dunin-Horkawicz, Joanna I. Sulkowska:
Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor. PLoS Comput. Biol. 17(10) (2021) - 2020
- [j9]Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna:
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinform. 21(1): 179 (2020) - 2019
- [j8]Martyna Nowacka, Pietro Boccaletto, Elzbieta Jankowska, Tomasz Jarzynka, Janusz M. Bujnicki, Stanislaw Dunin-Horkawicz:
RRMdb - an evolutionary-oriented database of RNA recognition motif sequences. Database J. Biol. Databases Curation 2019: bay148 (2019) - [j7]Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz:
DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinform. 35(16): 2790-2795 (2019) - 2018
- [j6]Pietro Boccaletto, Marcin Magnus, Catarina Almeida, Adriana Zyla, Astha Astha, Radoslaw Pluta, Blazej Baginski, Elzbieta Jankowska, Stanislaw Dunin-Horkawicz, Tomasz K. Wirecki, Michal J. Boniecki, Filip Stefaniak, Janusz M. Bujnicki:
RNArchitecture: a database and a classification system of RNA families, with a focus on structural information. Nucleic Acids Res. 46(Database-Issue): D202-D205 (2018) - 2015
- [j5]Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz M. Bujnicki:
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. BMC Bioinform. 16: 336:1-336:16 (2015) - 2013
- [j4]Magdalena A. Machnicka, Kaja Milanowska, Okan Osman Oglou, Elzbieta Purta, Malgorzata Kurkowska, Anna Olchowik, Witold Januszewski, Sebastian Kalinowski, Stanislaw Dunin-Horkawicz, Kristian Rother, Mark Helm, Janusz M. Bujnicki, Henri Grosjean:
MODOMICS: a database of RNA modification pathways - 2013 update. Nucleic Acids Res. 41(Database-Issue): 262-267 (2013) - 2009
- [j3]Anna Czerwoniec, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Katarzyna H. Kaminska, Joanna M. Kasprzak, Janusz M. Bujnicki, Henri Grosjean, Kristian Rother:
MODOMICS: a database of RNA modification pathways, update 2008. Nucleic Acids Res. 37(Database-Issue): 118-121 (2009) - 2007
- [j2]Karolina L. Tkaczuk, Stanislaw Dunin-Horkawicz, Elzbieta Purta, Janusz M. Bujnicki:
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases. BMC Bioinform. 8 (2007) - 2006
- [j1]Stanislaw Dunin-Horkawicz, Anna Czerwoniec, Michal J. Gajda, Marcin Feder, Henri Grosjean, Janusz M. Bujnicki:
MODOMICS: a database of RNA modification pathways. Nucleic Acids Res. 34(Database-Issue): 145-149 (2006)
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