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2020 – today
- 2024
[j10]Avery Mecham, Ashlie Stephenson, Badi I. Quinteros, Grace S. Brown, Stephen R. Piccolo
:
TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus. J. Integr. Bioinform. 21(1) (2024)- 2023
- [j9]Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez:
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023) - [j8]Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge:
Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course. PLoS Comput. Biol. 19(9) (2023) - [i2]Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge:
Many bioinformatics programming tasks can be automated with ChatGPT. CoRR abs/2303.13528 (2023) - 2022
- [j7]Stephen R. Piccolo, Avery Mecham, Nathan P. Golightly, Jérémie L. Johnson, Dustin B. Miller:
The ability to classify patients based on gene-expression data varies by algorithm and performance metric. PLoS Comput. Biol. 18(3) (2022) - 2021
- [j6]Dustin B. Miller, Stephen R. Piccolo:
trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios. BMC Bioinform. 22(1): 559 (2021) - 2020
- [i1]Dustin B. Miller, Stephen R. Piccolo:
CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline. F1000Research 9: 1211 (2020)
2010 – 2019
- 2017
- [j5]Bradley C. Naylor, Michael T. Porter, Elise Wilson, Adam Herring, Spencer Lofthouse, Austin Hannemann, Stephen R. Piccolo, Alan L. Rockwood, John C. Price:
DeuteRater: a tool for quantifying peptide isotope precision and kinetic proteomics. Bioinform. 33(10): 1514-1520 (2017) - 2015
- [j4]Ying Shen, Mumtahena Rahman, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti, Andrea H. Bild, W. Evan Johnson:
ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways. Bioinform. 31(11): 1745-1753 (2015) - [j3]Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo:
Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results. Bioinform. 31(22): 3666-3672 (2015) - 2013
- [j2]Stephen R. Piccolo, Lewis J. Frey:
Clinical and molecular models of Glioblastoma multiforme survival. Int. J. Data Min. Bioinform. 7(3): 245-265 (2013) - 2012
- [j1]Stephen R. Piccolo, Lewis J. Frey:
ML-Flex: A Flexible Toolbox for Performing Classification Analyses In Parallel. J. Mach. Learn. Res. 13: 555-559 (2012)
2000 – 2009
- 2008
- [c1]Stephen R. Piccolo, Lewis J. Frey:
Somatic Mutation Signatures of Cancer. AMIA 2008
Coauthor Index
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