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2020 – today
- 2024
[j10]Davy Weissenbacher
, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez:
Detecting goals of care conversations in clinical notes with active learning. J. Biomed. Informatics 151: 104618 (2024)- [c10]Dongfang Xu, Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Graciela Gonzalez-Hernandez:
Automatic sentence segmentation of clinical record narratives in real-world data. EMNLP 2024: 20780-20793 - [i2]Yao Ge, Sudeshna Das, Karen O'Connor, Mohammed Ali Al-Garadi, Graciela Gonzalez-Hernandez, Abeed Sarker:
Reddit-Impacts: A Named Entity Recognition Dataset for Analyzing Clinical and Social Effects of Substance Use Derived from Social Media. CoRR abs/2405.06145 (2024) - 2023
- [j9]Jesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O'Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas P. Tatonetti, Kyoung-Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore:
ChatGPT and large language models in academia: opportunities and challenges. BioData Min. 16(1) (2023) - [j8]Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez:
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023) - 2021
- [j7]Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez:
Active neural networks to detect mentions of changes to medication treatment in social media. J. Am. Medical Informatics Assoc. 28(12): 2551-2561 (2021) - [j6]Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker:
Text classification models for the automatic detection of nonmedical prescription medication use from social media. BMC Medical Informatics Decis. Mak. 21(1): 27 (2021) - [c9]Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez:
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. SMM4H@NAACL-HLT 2021: 21-32 - [e2]Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré-Maduell, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez:
Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, SMM4H@NAACL-HLT 2021, Mexico City, Mexico, June 10, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-31-2 [contents] - 2020
- [j5]Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch:
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. 36(20): 5120-5121 (2020) - [c8]Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. SMM4H@COLING 2020: 27-36 - [e1]Graciela Gonzalez-Hernandez, Ari Z. Klein, Ivan Flores, Davy Weissenbacher, Arjun Magge, Karen O'Connor, Abeed Sarker, Anne-Lyse Minard, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova:
Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@COLING 2020, Barcelona, Spain (Online), December 12, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-41-5 [contents]
2010 – 2019
- 2019
- [j4]Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez:
Deep neural networks ensemble for detecting medication mentions in tweets. J. Am. Medical Informatics Assoc. 26(12): 1618-1626 (2019) - [c7]Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez:
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT 2019: 907-916 - [c6]Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez:
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019. SMM4H@ACL 2019: 21-30 - [i1]Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez:
Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets. CoRR abs/1904.05308 (2019) - 2018
- [j3]Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez:
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. 34(9): 1606-1608 (2018) - [c5]Graciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu:
Session Introduction. PSB 2018: 559-565 - [c4]Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez:
Dealing with Medication Non-Adherence Expressions in Twitter. SMM4H@EMNLP 2018: 32-33 - 2017
- [c3]Ari Z. Klein, Abeed Sarker, Masoud Rouhizadeh, Karen O'Connor, Graciela Gonzalez:
Detecting Personal Medication Intake in Twitter: An Annotated Corpus and Baseline Classification System. BioNLP 2017: 136-142 - 2016
- [c2]Ryan Sullivan, Abeed Sarker, Karen O'Connor, Amanda Goodin, Mark Karlsrud, Graciela Gonzalez:
Finding Potentially Unsafe Nutritional Supplements from User Reviews with Topic Modeling. PSB 2016: 528-539 - 2015
- [j2]Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel E. Ginn, Graciela Gonzalez-Hernandez:
Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. J. Am. Medical Informatics Assoc. 22(3): 671-681 (2015) - [j1]Abeed Sarker, Rachel E. Ginn, Azadeh Nikfarjam, Karen O'Connor, Karen L. Smith, Swetha Jayaraman, Tejaswi Upadhaya, Graciela Gonzalez-Hernandez:
Utilizing social media data for pharmacovigilance: A review. J. Biomed. Informatics 54: 202-212 (2015) - 2014
- [c1]Karen O'Connor, Azadeh Nikfarjam, Rachel E. Ginn, Pranoti Pimpalkhute, Abeed Sarker, Karen L. Smith, Graciela Gonzalez-Hernandez:
Pharmacovigilance on Twitter? Mining Tweets for Adverse Drug Reactions. AMIA 2014
Coauthor Index
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