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ORCIDDario Ghersi
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2020 – today
- 2022
[j13]William Gasper, Francesca Rossi
, Matteo Ligorio, Dario Ghersi:
Variant calling enhances the identification of cancer cells in single-cell RNA sequencing data. PLoS Comput. Biol. 18(10): 1010576 (2022)- 2021
- [j12]Ryan Ehrlich, Larisa Kamga, Anna Gil, Katherine Luzuriaga, Liisa K. Selin, Dario Ghersi:
SwarmTCR: a computational approach to predict the specificity of T cell receptors. BMC Bioinform. 22(1): 422 (2021) - [c8]William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi:
Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research. BIBM 2021: 3570-3577 - 2020
- [j11]Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper:
Measurement of structural change in co-expression networks from cancer gene expression data. Int. J. Data Min. Bioinform. 24(4): 291-305 (2020) - [j10]Sean West, Hesham Ali, Dario Ghersi:
NEEP: null empirically estimated p-values for high-throughput molecular survival analysis. J. Open Source Softw. 5(52): 2044 (2020) - [c7]William Gasper, Parvathi Chundi, Dario Ghersi:
MeSH Indexing Using the Biomedical Citation Network. BCB 2020: 49:1-49:8
2010 – 2019
- 2019
- [j9]Matthew L. Hale, Ishwor Thapa, Dario Ghersi:
FunSet: an open-source software and web server for performing and displaying Gene Ontology enrichment analysis. BMC Bioinform. 20(1): 359:1-359:8 (2019) - [j8]Sean West, Sushil Kumar, Surinder K. Batra, Hesham Ali, Dario Ghersi:
Uncovering and characterizing splice variants associated with survival in lung cancer patients. PLoS Comput. Biol. 15(10) (2019) - [c6]Qianran Li, Dario Ghersi, Ishwor Thapa, Ling Zhang, Hesham Ali, Kate Cooper:
Identifying Structural Changes in Correlation Networks Models of Cancer Gene Expression by Stage. BIBM 2019: 2075-2082 - [r3]Asuda Sharma, Hesham Ali, Dario Ghersi:
Cluster Analysis of Biological Networks. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1036-1046 - [r2]Ramakanth Chirravuri Venkata, Dario Ghersi:
Biological Pathway Data Formats and Standards. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1063-1066 - [r1]Ramakanth Chirravuri Venkata, Dario Ghersi:
Biological Pathway Analysis. Encyclopedia of Bioinformatics and Computational Biology (1) 2019: 1067-1070 - 2018
- [j7]Daniel Munro, Dario Ghersi, Mona Singh:
Two critical positions in zinc finger domains are heavily mutated in three human cancer types. PLoS Comput. Biol. 14(6) (2018) - 2017
- [j6]Dario Ghersi, Abhishek Parakh, Mihaly Mezei:
Comparison of a quantum random number generator with pseudorandom number generators for their use in molecular Monte Carlo simulations. J. Comput. Chem. 38(31): 2713-2720 (2017) - [c5]Ryan Ehrlich, Dario Ghersi:
Analyzing T cell receptor alpha/beta usage in binding to the pMHC. BIBM 2017: 83-87 - [c4]Filippo Castiglione, Dario Ghersi, Franco Celada:
In-silico analysis of the "memory anti-Naïve" effect in anti-viral cross-reactive responses. BIBM 2017: 1433-1437 - 2016
- [c3]Kathryn M. Cooper, Dhundy Bastola, Robin A. Gandhi, Dario Ghersi, Steven H. Hinrichs, Marsha Morien, Ann L. Fruhling:
Forecasting the Spread of Mosquito-Borne Disease using Publicly Accessible Data: A Case Study in Chikungunya. AMIA 2016 - [c2]Dario Ghersi, Roberto Sanchez:
Recovering Bound Forms of Protein Structures Using the Elastic Network Model and Molecular Interaction Fields. BCB 2016: 50-57 - 2015
- [j5]Yuri Pritykin, Dario Ghersi, Mona Singh:
Genome-Wide Detection and Analysis of Multifunctional Genes. PLoS Comput. Biol. 11(10) (2015) - [c1]Akshay Balasubramanya, Ishwor Thapa, Dhundy Bastola, Dario Ghersi:
A novel approach to identify shared fragments in drugs and natural products. BIBM 2015: 575-580 - 2014
- [j4]Dario Ghersi, Mona Singh:
molBLOCKS: decomposing small molecule sets and uncovering enriched fragments. Bioinform. 30(14): 2081-2083 (2014) - 2013
- [j3]Dario Ghersi, Mona Singh:
Disentangling function from topology to infer the network properties of disease genes. BMC Syst. Biol. 7: 5 (2013)
2000 – 2009
- 2009
- [j2]Dario Ghersi, Roberto Sanchez:
EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures. Bioinform. 25(23): 3185-3186 (2009) - [j1]Marylens Hernandez, Dario Ghersi, Roberto Sanchez:
SITEHOUND-web: a server for ligand binding site identification in protein structures. Nucleic Acids Res. 37(Web-Server-Issue): 413-416 (2009)
Coauthor Index
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