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Journal Articles
- 2023
[j9]Samantha P. Beik
, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez:
Unified tumor growth mechanisms from multimodel inference and dataset integration. PLoS Comput. Biol. 19(7) (2023)- 2021
- [j8]Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez:
Thunor: visualization and analysis of high-throughput dose-response datasets. Nucleic Acids Res. 49(Webserver-Issue): 633-640 (2021) - [j7]Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez:
Unsupervised logic-based mechanism inference for network-driven biological processes. PLoS Comput. Biol. 17(6) (2021) - 2020
- [j6]Fengkai Zhang, Lucian P. Smith, Michael L. Blinov, James R. Faeder, William S. Hlavacek, José Juan Tapia, Sarah M. Keating, Nicolas Rodriguez, Andreas Dräger, Leonard A. Harris, Andrew Finney, Bin Hu, Michael Hucka, Martin Meier-Schellersheim:
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2. J. Integr. Bioinform. 17(2-3) (2020) - 2017
- [j5]Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez:
GPU-powered model analysis with PySB/cupSODA. Bioinform. 33(21): 3492-3494 (2017) - [j4]Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher:
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. PLoS Comput. Biol. 13(2) (2017) - 2016
- [j3]Leonard A. Harris, Justin S. Hogg, José Juan Tapia, John A. P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder:
BioNetGen 2.2: advances in rule-based modeling. Bioinform. 32(21): 3366-3368 (2016) - 2014
- [j2]John E. Wenskovitch, Leonard A. Harris, José Juan Tapia, James R. Faeder, G. Elisabeta Marai:
MOSBIE: a tool for comparison and analysis of rule-based biochemical models. BMC Bioinform. 15: 316 (2014) - [j1]Justin S. Hogg, Leonard A. Harris, Lori J. Stover, Niketh S. Nair, James R. Faeder:
Exact Hybrid Particle/Population Simulation of Rule-Based Models of Biochemical Systems. PLoS Comput. Biol. 10(4) (2014)
Conference and Workshop Papers
- 2009
- [c2]Leonard A. Harris, Justin S. Hogg, James R. Faeder:
Compartmental Rule-based Modeling of Biochemical Systems. WSC 2009: 908-919 - 2008
- [c1]Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay:
Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway. CMSB 2008: 231-250
Coauthor Index
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