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2020 – today
- 2023
[j10]Martina Prugger
, Lukas Einkemmer, Carlos F. Lopez:
A dynamical low-rank approach to solve the chemical master equation for biological reaction networks. J. Comput. Phys. 489: 112250 (2023)- [j9]Michael W. Irvin, Arvind Ramanathan, Carlos F. Lopez:
Model certainty in cellular network-driven processes with missing data. PLoS Comput. Biol. 19(4) (2023) - [j8]Samantha P. Beik, Leonard A. Harris, Michael A. Kochen, Julien Sage, Vito Quaranta, Carlos F. Lopez:
Unified tumor growth mechanisms from multimodel inference and dataset integration. PLoS Comput. Biol. 19(7) (2023) - 2022
- [j7]Alexander L. R. Lubbock, Carlos F. Lopez:
Microbench: automated metadata management for systems biology benchmarking and reproducibility in Python. Bioinform. 38(20): 4823-4825 (2022) - 2021
- [j6]Alexander L. R. Lubbock, Leonard A. Harris, Vito Quaranta, Darren R. Tyson, Carlos F. Lopez:
Thunor: visualization and analysis of high-throughput dose-response datasets. Nucleic Acids Res. 49(Webserver-Issue): 633-640 (2021) - [j5]Martina Prugger, Lukas Einkemmer, Samantha P. Beik, Perry T. Wasdin, Leonard A. Harris, Carlos F. Lopez:
Unsupervised logic-based mechanism inference for network-driven biological processes. PLoS Comput. Biol. 17(6) (2021)
2010 – 2019
- 2019
- [j4]David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta:
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers. PLoS Comput. Biol. 15(10) (2019) - 2018
- [j3]Erin M. Shockley, Jasper A. Vrugt, Carlos F. Lopez:
PyDREAM: high-dimensional parameter inference for biological models in python. Bioinform. 34(4): 695-697 (2018) - 2017
- [j2]Leonard A. Harris, Marco S. Nobile, James C. Pino, Alexander L. R. Lubbock, Daniela Besozzi, Giancarlo Mauri, Paolo Cazzaniga, Carlos F. Lopez:
GPU-powered model analysis with PySB/cupSODA. Bioinform. 33(21): 3492-3494 (2017) - [j1]Julia Chifman, Seda Arat, Zhiyong Deng, Erica Lemler, James C. Pino, Leonard A. Harris, Michael A. Kochen, Carlos F. Lopez, Steven A. Akman, Frank M. Torti, Suzy V. Torti, Reinhard C. Laubenbacher:
Activated Oncogenic Pathway Modifies Iron Network in Breast Epithelial Cells: A Dynamic Modeling Perspective. PLoS Comput. Biol. 13(2) (2017)
Coauthor Index
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