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ORCIDAdam J. Shephard
Adam Shephard
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2020 – today
- 2024
[j3]Mostafa Jahanifar
, Adam Shephard, Neda Zamanitajeddin, Simon Graham, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot:
Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures. Medical Image Anal. 94: 103132 (2024)- [j2]Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonas Ammeling, Jonathan Ganz, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Çayir, Hongyan Gu, Xiang Anthony Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, VG Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger, Christof A. Bertram:
Domain generalization across tumor types, laboratories, and species - Insights from the 2022 edition of the Mitosis Domain Generalization Challenge. Medical Image Anal. 94: 103155 (2024) - [c5]Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza:
An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. ISBI 2024: 1-5 - [i12]Mark Eastwood, John Pocock, Mostafa Jahanifar, Adam Shephard, Skiros Habib, Ethar Alzaid, Abdullah Alsalemi, Jan Lukas Robertus, Nasir M. Rajpoot, Shan E Ahmed Raza, Fayyaz Minhas:
TIAViz: A Browser-based Visualization Tool for Computational Pathology Models. CoRR abs/2402.09990 (2024) - 2023
- [j1]Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopfleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas K. Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Adam Shephard, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Ramona Erber, Andrea Klang, Karoline Lipnik, Pompei Bolfa, Michael J. Dark, Gabriel Wasinger, Mitko Veta, Katharina Breininger:
Mitosis domain generalization in histopathology images - The MIDOG challenge. Medical Image Anal. 84: 102699 (2023) - [c4]Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha M. Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias P. Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, A. Emre Kavur, Oldrich Kodym, Michal Kozubek, Jianning Li, Hongwei Bran Li, Jun Ma, Carlos Martín-Isla, Bjoern H. Menze, J. Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patino, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin M. H. van Wijnen, Martin Wagner, D. Wei, Amine Yamlahi, Moi Hoon Yap, C. Yuan, Maximilian Zenk, A. Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, J. Cho, C. Choi, Q. Dou, Ivan Ezhov, Christoph M. Friedrich, C. Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García-Faura, Maria Grammatikopoulou, S. Hong, Mostafa Jahanifar, I. Jang, Abdolrahim Kadkhodamohammadi, I. Kang, Florian Kofler, S. Kondo, Hugo Jaco Kuijf, M. Li, M. Luu, Tomaz Martincic, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, S. Pang, J. Park, S. Park, Szymon Plotka, Élodie Puybareau, Nasir M. Rajpoot, K. Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Stepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Hélène Urien, João L. Vilaça, Kareem A. Wahid, H. Wang, J. Wang, L. Wang, X. Wang, Benedikt Wiestler, Marek Wodzinski, F. Xia, J. Xie, Z. Xiong, Sen Yang, Y. Yang, Z. Zhao, Klaus H. Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein:
Why is the Winner the Best? CVPR 2023: 19955-19966 - [d13]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Zenodo, 2023
- [d12]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Zenodo, 2023 - [d11]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Zenodo, 2023 - [d10]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Zenodo, 2023 - [i11]Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, Dagmar Kainmueller, Carola-Bibiane Schönlieb, Shuolin Liu, Dhairya Talsania, Yughender Meda, Prakash Mishra, Muhammad Ridzuan, Oliver Neumann, Marcel P. Schilling, Markus Reischl, Ralf Mikut, Banban Huang, Hsiang-Chin Chien, Ching-Ping Wang, Chia-Yen Lee, Hong-Kun Lin, Zaiyi Liu, Xipeng Pan, Chu Han, Jijun Cheng, Muhammad Dawood, Srijay Deshpande, Raja Muhammad Saad Bashir, Adam Shephard, Pedro Costa, João D. Nunes, Aurélio Campilho, Jaime S. Cardoso, Hrishikesh P. S, Densen Puthussery, Devika R. G, Jiji C V, Ye Zhang, Zijie Fang, Zhifan Lin, Yongbing Zhang, Chunhui Lin, Liukun Zhang, Lijian Mao, Min Wu, Thi Tuong Vi Vo, Soo-Hyung Kim, Taebum Lee, Satoshi Kondo, Satoshi Kasai, Pranay Dumbhare, Vedant Phuse, Yash Dubey, Ankush Jamthikar, Trinh Thi Le Vuong, Jin Tae Kwak, Dorsa Ziaei, Hyun Jung, Tianyi Miao, David R. J. Snead, Shan-E-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot:
CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. CoRR abs/2303.06274 (2023) - [i10]Adam J. Shephard, Raja Muhammad Saad Bashir, Hanya Mahmood, Mostafa Jahanifar, Fayyaz Minhas, Shan E Ahmed Raza, Kris D. McCombe, Stephanie G. Craig, Jacqueline A. James, Jill Brooks, Paul Nankivell, Hisham Mehanna, Syed Ali Khurram, Nasir M. Rajpoot:
A Fully Automated and Explainable Algorithm for the Prediction of Malignant Transformation in Oral Epithelial Dysplasia. CoRR abs/2307.03757 (2023) - [i9]Marc Aubreville, Nikolas Stathonikos, Taryn A. Donovan, Robert Klopfleisch, Jonathan Ganz, Jonas Ammeling, Frauke Wilm, Mitko Veta, Samir Jabari, Markus Eckstein, Jonas Annuscheit, Christian Krumnow, Engin Bozaba, Sercan Cayir, Hongyan Gu, Xiang 'Anthony' Chen, Mostafa Jahanifar, Adam Shephard, Satoshi Kondo, Satoshi Kasai, Sujatha Kotte, VG Saipradeep, Maxime W. Lafarge, Viktor H. Koelzer, Ziyue Wang, Yongbing Zhang, Sen Yang, Xiyue Wang, Katharina Breininger, Christof A. Bertram:
Domain generalization across tumor types, laboratories, and species - insights from the 2022 edition of the Mitosis Domain Generalization Challenge. CoRR abs/2309.15589 (2023) - [i8]Mostafa Jahanifar, Manahil Raza, Kesi Xu, Trinh Thi Le Vuong, Robert Jewsbury, Adam Shephard, Neda Zamanitajeddin, Jin Tae Kwak, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot:
Domain Generalization in Computational Pathology: Survey and Guidelines. CoRR abs/2310.19656 (2023) - [i7]Adam J. Shephard, Hanya Mahmood, Shan E Ahmed Raza, Anna Luíza Damaceno Araújo, Alan Roger Santos-Silva, Marcio Ajudarte Lopes, Pablo Agustin Vargas, Kris D. McCombe, Stephanie G. Craig, Jacqueline A. James, Jill Brooks, Paul Nankivell, Hisham Mehanna, Syed Ali Khurram, Nasir M. Rajpoot:
Transformer-based Model for Oral Epithelial Dysplasia Segmentation. CoRR abs/2311.05452 (2023) - [i6]Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza:
An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. CoRR abs/2311.06185 (2023) - 2022
- [c3]Neda Azarmehr, Adam J. Shephard, Hanya Mahmood, Nasir M. Rajpoot, Syed Ali Khurram:
A Neural Architecture Search Based Framework for Segmentation of Epithelium, Nuclei and Oral Epithelial Dysplasia Grading. MIUA 2022: 357-370 - [d9]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2022 - [d8]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2022 - [d7]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2022 - [d6]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2022 - [d5]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2022 - [d4]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2022 - [d3]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Zenodo, 2022 - [d2]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Zenodo, 2022 - [i5]Muhammad Dawood, Raja Muhammad Saad Bashir, Srijay Deshpande, Manahil Raza, Adam J. Shephard:
Cellular Segmentation and Composition in Routine Histology Images using Deep Learning. CoRR abs/2203.02510 (2022) - [i4]Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge. CoRR abs/2206.11943 (2022) - [i3]Mostafa Jahanifar, Adam J. Shephard, Neda Zamanitajeddin, Shan E Ahmed Raza, Nasir M. Rajpoot:
Stain-Robust Mitotic Figure Detection for MIDOG 2022 Challenge. CoRR abs/2208.12587 (2022) - 2021
- [c2]Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot:
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. ICCVW 2021: 552-561 - [c1]Mostafa Jahanifar, Adam J. Shephard, Neda Zamanitajeddin, Raja Muhammad Saad Bashir, Mohsin Bilal, Syed Ali Khurram, Fayyaz A. Minhas, Nasir M. Rajpoot:
Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge. MIDOG/MOOD/Learn2Reg@MICCAI 2021: 48-52 - [d1]John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Zenodo, 2021 - [i2]Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot:
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. CoRR abs/2108.13904 (2021) - [i1]Mostafa Jahanifar, Adam J. Shephard, Neda Zamani Tajeddin, Raja Muhammad Saad Bashir, Mohsin Bilal, Syed Ali Khurram, Fayyaz A. Minhas, Nasir M. Rajpoot:
Stain-Robust Mitotic Figure Detection for the Mitosis Domain Generalization Challenge. CoRR abs/2109.00853 (2021)
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