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Journal Articles
- 2023
[j5]Kamil Kaminski, Jan Ludwiczak
, Kamil Pawlicki, Vikram Alva, Stanislaw Dunin-Horkawicz:
pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models. Bioinform. 39(10) (2023)- 2022
- [j4]Kamil Kaminski, Jan Ludwiczak, Maciej Jasinski, Adriana Bukala, Rafal Madaj, Krzysztof Szczepaniak, Stanislaw Dunin-Horkawicz:
Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins. Briefings Bioinform. 23(1) (2022) - 2021
- [j3]Krzysztof Szczepaniak, Adriana Bukala, Antonio Marinho da Silva Neto, Jan Ludwiczak, Stanislaw Dunin-Horkawicz:
A library of coiled-coil domains: from regular bundles to peculiar twists. Bioinform. 36(22-23): 5368-5376 (2021) - 2020
- [j2]Matthew Merski, Krzysztof Mlynarczyk, Jan Ludwiczak, Jakub Skrzeczkowski, Stanislaw Dunin-Horkawicz, Maria W. Górna:
Self-analysis of repeat proteins reveals evolutionarily conserved patterns. BMC Bioinform. 21(1): 179 (2020) - 2019
- [j1]Jan Ludwiczak, Aleksander Winski, Krzysztof Szczepaniak, Vikram Alva, Stanislaw Dunin-Horkawicz:
DeepCoil - a fast and accurate prediction of coiled-coil domains in protein sequences. Bioinform. 35(16): 2790-2795 (2019)
Conference and Workshop Papers
- 2023
- [c1]Karolis Martinkus, Jan Ludwiczak, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Kyunghyun Cho, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas:
AbDiffuser: full-atom generation of in-vitro functioning antibodies. NeurIPS 2023
Informal and Other Publications
- 2023
- [i1]Karolis Martinkus, Jan Ludwiczak, Kyunghyun Cho, Wei-Ching Liang, Julien Lafrance-Vanasse, Isidro Hötzel, Arvind Rajpal, Yan Wu, Richard Bonneau, Vladimir Gligorijevic, Andreas Loukas:
AbDiffuser: Full-Atom Generation of In-Vitro Functioning Antibodies. CoRR abs/2308.05027 (2023)
Coauthor Index
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