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ORCIDSarala M. Wimalaratne
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- affiliation: DataCite, Belmont, CA, USA
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Journal Articles
- 2021
[j15]Manuel Bernal Llinares
, Javier Ferrer-Gómez, Nick S. Juty, Carole A. Goble, Sarala M. Wimalaratne, Henning Hermjakob:
Identifiers.org: Compact Identifier services in the cloud. Bioinform. 37(12): 1781-1782 (2021)- 2020
- [j14]Nick S. Juty, Sarala M. Wimalaratne, Stian Soiland-Reyes, John A. Kunze, Carole A. Goble, Tim Clark:
Unique, Persistent, Resolvable: Identifiers as the Foundation of FAIR. Data Intell. 2(1-2): 30-39 (2020) - 2018
- [j13]Mihai Glont, Tung V. N. Nguyen, Martin Graesslin, Robert Hälke, Raza Ali, Jochen Schramm, Sarala M. Wimalaratne, Varun B. Kothamachu, Nicolas Rodriguez, Maciej J. Swat, Jurgen Eils, Roland Eils, Camille Laibe, Rahuman S. Malik-Sheriff, Vijayalakshmi Chelliah, Nicolas Le Novère, Henning Hermjakob:
BioModels: expanding horizons to include more modelling approaches and formats. Nucleic Acids Res. 46(Database-Issue): D1248-D1253 (2018) - 2016
- [j12]Maciej J. Swat, Pierre Grenon, Sarala M. Wimalaratne:
ProbOnto: ontology and knowledge base of probability distributions. Bioinform. 32(17): 2719-2721 (2016) - 2015
- [j11]Sarala M. Wimalaratne, Jerven T. Bolleman, Nick S. Juty, Toshiaki Katayama, Michel Dumontier, Nicole Redaschi, Nicolas Le Novère, Henning Hermjakob, Camille Laibe:
SPARQL-enabled identifier conversion with Identifiers.org. Bioinform. 31(11): 1875-1877 (2015) - [j10]Vijayalakshmi Chelliah, Nick S. Juty, Ishan Ajmera, Raza Ali, Marine Dumousseau, Mihai Glont, Michael Hucka, Gaël Jalowicki, Sarah M. Keating, Vincent Knight-Schrijver, Audald Lloret-Villas, Kedar Nath Natarajan, Jean-Baptiste Pettit, Nicolas Rodriguez, Michael Schubert, Sarala M. Wimalaratne, Yangyang Zhao, Henning Hermjakob, Nicolas Le Novère, Camille Laibe:
BioModels: ten-year anniversary. Nucleic Acids Res. 43(Database-Issue): 542-548 (2015) - 2014
- [j9]Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson:
The EBI RDF platform: linked open data for the life sciences. Bioinform. 30(9): 1338-1339 (2014) - [j8]Sarala M. Wimalaratne, Pierre Grenon, Henning Hermjakob, Nicolas Le Novère, Camille Laibe:
BioModels linked dataset. BMC Syst. Biol. 8: 91 (2014) - 2012
- [j7]Sarala M. Wimalaratne, Pierre Grenon, Robert Hoehndorf, Georgios V. Gkoutos, Bernard de Bono:
An infrastructure for ontology-based information systems in biomedicine: RICORDO case study. Bioinform. 28(3): 448-450 (2012) - 2011
- [j6]Goksel Misirli, Jennifer Hallinan, Tommy Yu, James R. Lawson, Sarala M. Wimalaratne, Mike T. Cooling, Anil Wipat:
Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinform. 27(7): 973-979 (2011) - [j5]Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos:
A common layer of interoperability for biomedical ontologies based on OWL EL. Bioinform. 27(7): 1001-1008 (2011) - [j4]Andrew K. Miller, Tommy Yu, Randall Britten, Mike T. Cooling, James R. Lawson, Dougal Cowan, Alan Garny, Matt D. B. Halstead, Peter J. Hunter, David P. Nickerson, Geoff Nunns, Sarala M. Wimalaratne, Poul M. F. Nielsen:
Revision history aware repositories of computational models of biological systems. BMC Bioinform. 12: 22 (2011) - [j3]Robert Hoehndorf, Michel Dumontier, John H. Gennari, Sarala M. Wimalaratne, Bernard de Bono, Daniel L. Cook, Georgios V. Gkoutos:
Integrating systems biology models and biomedical ontologies. BMC Syst. Biol. 5: 124 (2011) - 2009
- [j2]Sarala M. Wimalaratne, Matt D. B. Halstead, Catherine M. Lloyd, Edmund J. Crampin, Poul M. F. Nielsen:
Biophysical annotation and representation of CellML models. Bioinform. 25(17): 2263-2270 (2009) - [j1]Sarala M. Wimalaratne, Matt D. B. Halstead, Catherine M. Lloyd, Mike T. Cooling, Edmund J. Crampin, Poul M. F. Nielsen:
A method for visualizing CellML models. Bioinform. 25(22): 3012-3019 (2009)
Conference and Workshop Papers
- 2011
- [c1]Pierre Grenon, Sarala M. Wimalaratne, Bernard de Bono:
Ontology-Strength Industry Standards: The Case of the Clinical Trial Domain. FOMI 2011: 41-49
Informal and Other Publications
- 2019
- [i1]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019)
Coauthor Index
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