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2020 – today
- 2020
[i2]Rutger A. Vos
, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi:
BioHackathon 2015: Semantics of data for life sciences and reproducible research. F1000Research 9: 136 (2020)
2010 – 2019
- 2019
- [j11]Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba, Masaki Kato:
MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons. Nucleic Acids Res. 47(Database-Issue): D382-D389 (2019) - [i1]Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi:
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services. F1000Research 8: 1677 (2019) - 2017
- [j10]Hirokazu Chiba, Ikuo Uchiyama:
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases. BMC Bioinform. 18(1): 93:1-93:6 (2017) - 2016
- [j9]Jesualdo Tomás Fernández-Breis, Hirokazu Chiba, María Del Carmen Legaz-García, Ikuo Uchiyama:
The Orthology Ontology: development and applications. J. Biomed. Semant. 7: 34 (2016) - 2015
- [j8]Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba:
MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data. Nucleic Acids Res. 43(Database-Issue): 270-276 (2015) - [c3]Jesualdo Tomás Fernández-Breis, María Del Carmen Legaz-García, Hirokazu Chiba, Ikuo Uchiyama:
Towards the Semantic Standardization of Orthology Content. SWAT4LS 2015: 74-83 - [c2]Hirokazu Chiba, Ikuo Uchiyama:
SPANG: A Command-line Client Supporting Query Generation for Distributed SPARQL Endpoints. SWAT4LS 2015: 218-219 - 2014
- [j7]Hirokazu Chiba, Ikuo Uchiyama:
Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score. BMC Bioinform. 15: 148 (2014) - 2013
- [j6]Ikuo Uchiyama, Motohiro Mihara, Hiroyo Nishide, Hirokazu Chiba:
MBGD update 2013: the microbial genome database for exploring the diversity of microbial world. Nucleic Acids Res. 41(Database-Issue): 631-635 (2013) - 2010
- [j5]Ikuo Uchiyama, Toshio Higuchi, Mikihiko Kawai:
MBGD update 2010: toward a comprehensive resource for exploring microbial genome diversity. Nucleic Acids Res. 38(Database-Issue): 361-365 (2010)
2000 – 2009
- 2007
- [j4]Ikuo Uchiyama:
MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups. Nucleic Acids Res. 35(Database-Issue): 343-346 (2007) - 2006
- [j3]Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi:
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes. BMC Bioinform. 7: 472 (2006) - 2003
- [j2]Ikuo Uchiyama:
MBGD: microbial genome database for comparative analysis. Nucleic Acids Res. 31(1): 58-62 (2003)
1990 – 1999
- 1997
- [c1]Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, Toshihisa Takagi:
Automatic Construction of Knowledge Base from Biological Papers. ISMB 1997: 218-225 - 1994
- [j1]Kenta Nakai, T. Tokimori, A. Ogiwara, Ikuo Uchiyama, T. Niiyama:
Gnome - an Internet-based sequence analysis tool. Comput. Appl. Biosci. 10(5): 547-550 (1994)
Coauthor Index
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