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Journal Articles
- 2023
[j12]Wenyi Yang, Pingping Wang
, Meng Luo, Yideng Cai, Chang Xu, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Fenglan Pang, Yuexin Yang, Huan Nie, Qinghua Jiang, Zhigang Liu, Zhaochun Xu:
DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. Bioinform. 39(10) (2023)- 2022
- [j11]Rui Cheng, Zhaochun Xu, Meng Luo, Pingping Wang, Huimin Cao, Xiyun Jin, Wenyang Zhou, Lixing Xiao, Qinghua Jiang:
Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development. Briefings Bioinform. 23(2) (2022) - [j10]Wenyang Zhou, Chang Xu, Meng Luo, Pingping Wang, Zhaochun Xu, Guangfu Xue, Xiyun Jin, Yan Huang, Yiqun Li, Huan Nie, Qinghua Jiang, Anastasia A. Anashkina:
MutCov: A pipeline for evaluating the effect of mutations in spike protein on infectivity and antigenicity of SARS-CoV-2. Comput. Biol. Medicine 145: 105509 (2022) - [j9]Xiaoyu Lin, Huan Nie, Ran Tang, Pingping Wang, Xiyun Jin, Qinghua Jiang, Fang Han, Na Chen, Yu Li:
Network analysis between neuron dysfunction and neuroimmune response based on neural single-cell transcriptome of COVID-19 patients. Comput. Biol. Medicine 150: 106055 (2022) - 2021
- [j8]Mengying Zhang, Xiyun Jin, Junyi Li, Yi Tian, Qi Wang, Xinhui Li, Juan Xu, Yongsheng Li, Xia Li:
CeRNASeek: an R package for identification and analysis of ceRNA regulation. Briefings Bioinform. 22(3) (2021) - [j7]Yan Huang, Pingping Wang, Wenyang Zhou, Meng Luo, Zhaochun Xu, Rui Cheng, Chang Xu, Xiyun Jin, Yiqun Li, Qinghua Jiang:
Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles. Briefings Bioinform. 22(6) (2021) - [j6]Xiyun Jin, Wenyang Zhou, Meng Luo, Pingping Wang, Zhaochun Xu, Kexin Ma, Huimin Cao, Chang Xu, Yan Huang, Rui Cheng, Lixing Xiao, Xiaoyu Lin, Fenglan Pang, Yiqun Li, Huan Nie, Qinghua Jiang:
Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing. Briefings Bioinform. 22(6) (2021) - [j5]Zhaochun Xu, Meng Luo, Weizhong Lin, Guangfu Xue, Pingping Wang, Xiyun Jin, Chang Xu, Wenyang Zhou, Yideng Cai, Wenyi Yang, Huan Nie, Qinghua Jiang:
DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor. Briefings Bioinform. 22(6) (2021) - 2019
- [j4]Yongsheng Li, Caiqin Huo, Tao Pan, Lili Li, Xiyun Jin, Xiaoyu Lin, Juan Chen, Jinwen Zhang, Zheng Guo, Juan Xu, Xia Li:
Systematic review regulatory principles of non-coding RNAs in cardiovascular diseases. Briefings Bioinform. 20(1): 66-76 (2019) - [j3]Yongsheng Li, Xiyun Jin, Zishan Wang, Lili Li, Hong Chen, Xiaoyu Lin, Song Yi, Yunpeng Zhang, Juan Xu:
Systematic review of computational methods for identifying miRNA-mediated RNA-RNA crosstalk. Briefings Bioinform. 20(4): 1193-1204 (2019) - [j2]Tingting Shao, Guangjuan Wang, Hong Chen, Yunjin Xie, Xiyun Jin, Jing Bai, Juan Xu, Xia Li, Jian Huang, Yan Jin, Yongsheng Li:
Survey of miRNA-miRNA cooperative regulation principles across cancer types. Briefings Bioinform. 20(5): 1621-1638 (2019) - [j1]Chunjie Jiang, Na Ding, Junyi Li, Xiyun Jin, Lili Li, Tao Pan, Caiqin Huo, Yongsheng Li, Juan Xu, Xia Li:
Landscape of the long non-coding RNA transcriptome in human heart. Briefings Bioinform. 20(5): 1812-1825 (2019)
Coauthor Index
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