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2020 – today
- 2024
[j13]Liyi Yu
, Zhaochun Xu, Wangren Qiu, Xuan Xiao:
MSDSE: Predicting drug-side effects based on multi-scale features and deep multi-structure neural network. Comput. Biol. Medicine 169: 107812 (2024)- 2023
- [j12]Qi Yang, Zhaochun Xu, Wenyang Zhou, Pingping Wang, Qinghua Jiang, Liran Juan:
An interpretable single-cell RNA sequencing data clustering method based on latent Dirichlet allocation. Briefings Bioinform. 24(4) (2023) - [j11]Wenyi Yang, Pingping Wang, Meng Luo, Yideng Cai, Chang Xu, Guangfu Xue, Xiyun Jin, Rui Cheng, Jinhao Que, Fenglan Pang, Yuexin Yang, Huan Nie, Qinghua Jiang, Zhigang Liu, Zhaochun Xu:
DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data. Bioinform. 39(10) (2023) - 2022
- [j10]Rui Cheng, Zhaochun Xu, Meng Luo, Pingping Wang, Huimin Cao, Xiyun Jin, Wenyang Zhou, Lixing Xiao, Qinghua Jiang:
Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development. Briefings Bioinform. 23(2) (2022) - [j9]Qian Ding, Wenyi Yang, Meng Luo, Chang Xu, Zhaochun Xu, Fenglan Pang, Yideng Cai, Anastasia A. Anashkina, Xi Su, Na Chen, Qinghua Jiang:
CBLRR: a cauchy-based bounded constraint low-rank representation method to cluster single-cell RNA-seq data. Briefings Bioinform. 23(5) (2022) - [j8]Wenyang Zhou, Chang Xu, Meng Luo, Pingping Wang, Zhaochun Xu, Guangfu Xue, Xiyun Jin, Yan Huang, Yiqun Li, Huan Nie, Qinghua Jiang, Anastasia A. Anashkina:
MutCov: A pipeline for evaluating the effect of mutations in spike protein on infectivity and antigenicity of SARS-CoV-2. Comput. Biol. Medicine 145: 105509 (2022) - 2021
- [j7]Yan Huang, Pingping Wang, Wenyang Zhou, Meng Luo, Zhaochun Xu, Rui Cheng, Chang Xu, Xiyun Jin, Yiqun Li, Qinghua Jiang:
Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles. Briefings Bioinform. 22(6) (2021) - [j6]Xiyun Jin, Wenyang Zhou, Meng Luo, Pingping Wang, Zhaochun Xu, Kexin Ma, Huimin Cao, Chang Xu, Yan Huang, Rui Cheng, Lixing Xiao, Xiaoyu Lin, Fenglan Pang, Yiqun Li, Huan Nie, Qinghua Jiang:
Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing. Briefings Bioinform. 22(6) (2021) - [j5]Zhaochun Xu, Meng Luo, Weizhong Lin, Guangfu Xue, Pingping Wang, Xiyun Jin, Chang Xu, Wenyang Zhou, Yideng Cai, Wenyi Yang, Huan Nie, Qinghua Jiang:
DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor. Briefings Bioinform. 22(6) (2021) - [j4]Dan Zhang, Zhao-Chun Xu, Wei Su, Yu-He Yang, Hao Lv, Hui Yang, Hao Lin:
iCarPS: a computational tool for identifying protein carbonylation sites by novel encoded features. Bioinform. 37(2): 171-177 (2021) - [j3]Ang Sun, Xuan Xiao, Zhao-Chun Xu:
iPTT(2 L)-CNN: A Two-Layer Predictor for Identifying Promoters and Their Types in Plant Genomes by Convolutional Neural Network. Comput. Math. Methods Medicine 2021: 6636350:1-6636350:9 (2021)
2010 – 2019
- 2019
- [j2]Zhao-Chun Xu, Peng-Mian Feng, Hui Yang, Wangren Qiu, Wei Chen, Hao Lin:
iRNAD: a computational tool for identifying D modification sites in RNA sequence. Bioinform. 35(23): 4922-4929 (2019) - 2017
- [c2]Jianshe Zhou, Zhaochun Xu, Jie Liu, Weiqiang Wang, Ke Lu:
Affine Collaborative Representation Based Classification for In-Air Handwritten Chinese Character Recognition. PCM (1) 2017: 444-452 - 2016
- [j1]Wangren Qiu, Bi-Qian Sun, Xuan Xiao, Zhao-Chun Xu, Kuo-Chen Chou:
iPTM-mLys: identifying multiple lysine PTM sites and their different types. Bioinform. 32(20): 3116-3123 (2016) - [c1]Zhaochun Xu, Weiqiang Wang, Ke Lu:
MQDF with a novel covariance matrix estimation and discriminant LSRC, which is better for in-air handwritten Chinese character recognition. ICIP 2016: 3274-3278
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