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ORCIDVipina Kuttichi Keloth
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Journal Articles
- 2024
[j12]Yan Hu
, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu:
Improving large language models for clinical named entity recognition via prompt engineering. J. Am. Medical Informatics Assoc. 31(9): 1812-1820 (2024)- [j11]Zhao Li, Qiang Wei, Liang-Chin Huang, Jianfu Li, Yan Hu, Yao-Shun Chuang, Jianping He, Avisha Das, Vipina Kuttichi Keloth, Yuntao Yang, Chiamaka S. Diala, Kirk E. Roberts, Cui Tao, Xiaoqian Jiang, W. Jim Zheng, Hua Xu:
Ensemble pretrained language models to extract biomedical knowledge from literature. J. Am. Medical Informatics Assoc. 31(9): 1904-1911 (2024) - [j10]Sunyang Fu, Heling Jia, Maria Vassilaki, Vipina Kuttichi Keloth, Yifang Dang, Yujia Zhou, Muskan Garg, Ronald C. Petersen, Jennifer St Sauver, Sungrim Moon, Liwei Wang, Andrew Wen, Fang Li, Hua Xu, Cui Tao, Jungwei Fan, Hongfang Liu, Sunghwan Sohn:
FedFSA: Hybrid and federated framework for functional status ascertainment across institutions. J. Biomed. Informatics 152: 104623 (2024) - 2023
- [j9]Yan Hu, Vipina Kuttichi Keloth, Kalpana Raja, Yong Chen, Hua Xu:
Towards precise PICO extraction from abstracts of randomized controlled trials using a section-specific learning approach. Bioinform. 39(9) (2023) - [j8]Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao:
Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). J. Am. Medical Informatics Assoc. 30(9): 1465-1473 (2023) - [j7]Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu:
Representing and utilizing clinical textual data for real world studies: An OHDSI approach. J. Biomed. Informatics 142: 104343 (2023) - [j6]Vipina Kuttichi Keloth, Shuxin Zhou, Luke Lindemann, Ling Zheng, Gai Elhanan, Andrew J. Einstein, James Geller, Yehoshua Perl:
Mining of EHR for interface terminology concepts for annotating EHRs of COVID patients. BMC Medical Informatics Decis. Mak. 23(1): 40 (2023) - 2021
- [j5]Ling Zheng, Yehoshua Perl, Yongqun He, Christopher Ochs, James Geller, Hao Liu, Vipina Kuttichi Keloth:
Visual comprehension and orientation into the COVID-19 CIDO ontology. J. Biomed. Informatics 120: 103861 (2021) - 2020
- [j4]Ling Zheng, Zhe He, Duo Helen Wei, Vipina Kuttichi Keloth, Jungwei Fan, Luke Lindemann, Xinxin Zhu, James J. Cimino, Yehoshua Perl:
A review of auditing techniques for the Unified Medical Language System. J. Am. Medical Informatics Assoc. 27(10): 1625-1638 (2020) - [j3]Vipina Kuttichi Keloth, James Geller, Yan Chen, Julia Xu:
Extending import detection algorithms for concept import from two to three biomedical terminologies. BMC Medical Informatics Decis. Mak. 20-S(10): 272 (2020) - [j2]Ling Zheng, Hua Min, Yan Chen, Vipina Kuttichi Keloth, James Geller, Yehoshua Perl, George Hripcsak:
Outlier concepts auditing methodology for a large family of biomedical ontologies. BMC Medical Informatics Decis. Mak. 20-S(10): 296 (2020) - 2019
- [j1]Vipina Kuttichi Keloth, Zhe He, Gai Elhanan, James Geller:
Alternative classification of identical concepts in different terminologies: Different ways to view the world. J. Biomed. Informatics 94 (2019)
Conference and Workshop Papers
- 2024
- [c10]Mahshad Koohi H. Dehkordi, Navya Martin Kollapally, Yehoshua Perl, James Geller, Fadi P. Deek, Hao Liu, Vipina Kuttichi Keloth, Gai Elhanan, Andrew J. Einstein:
Skimming of Electronic Health Records Highlighted by an Interface Terminology Curated with Machine Learning Mining. BIOSTEC (2) 2024: 498-505 - 2023
- [c9]Mahshad Koohi H. Dehkordi, Andrew J. Einstein, Shuxin Zhou, Gai Elhanan, Yehoshua Perl, Vipina Kuttichi Keloth, James Geller, Hao Liu:
Using annotation for computerized support for fast skimming of cardiology electronic health record notes. BIBM 2023: 4043-4050 - 2022
- [c8]Yan Hu, Vipina Kuttichi Keloth, Hua Xu:
Section-specific Annotation of PICO for Medical Evidence Extraction: Applications to Articles of Randomized Controlled Trials for Alzheimer's Disease and COVID-19. AMIA 2022 - [c7]Avisha Das, Salih Selek, Alia R. Warner, Xu Zuo, Yan Hu, Vipina Kuttichi Keloth, Jianfu Li, W. Jim Zheng, Hua Xu:
Conversational Bots for Psychotherapy: A Study of Generative Transformer Models Using Domain-specific Dialogues. BioNLP@ACL 2022: 285-297 - 2020
- [c6]Vipina Kuttichi Keloth, Shuxin Zhou, Andrew J. Einstein, Gai Elhanan, Yan Chen, James Geller, Yehoshua Perl:
Generating Training Data for Concept-Mining for an 'Interface Terminology' Annotating Cardiology EHRs. BIBM 2020: 1728-1735 - [c5]Vipina Kuttichi Keloth, Shuxin Zhou, Luke Lindemann, Gai Elhanan, Andrew J. Einstein, James Geller, Yehoshua Perl:
Mining Concepts for a COVID Interface Terminology for Annotation of EHRs. IEEE BigData 2020: 3753-3760 - 2019
- [c4]James Geller, Shmuel T. Klein, Vipina Kuttichi Keloth:
Measuring and Avoiding Information Loss During Concept Import from a Source to a Target Ontology. KEOD 2019: 442-449 - 2018
- [c3]James Geller, Vipina Kuttichi Keloth, Mark A. Musen:
How Sustainable are Biomedical Ontologies? AMIA 2018 - [c2]Vipina Kuttichi Keloth, Zhe He, Yan Chen, James Geller:
Leveraging Horizontal Density Differences between Ontologies to Identify Missing Child Concepts: A Proof of Concept. AMIA 2018 - [c1]Zhe He, Vipina Kuttichi Keloth, Yan Chen, James Geller:
Extended Analysis of Topological-Pattern-Based Ontology Enrichment. BIBM 2018: 1641-1648
Informal and Other Publications
- 2024
- [i4]Qianqian Xie, Qingyu Chen, Aokun Chen, Cheng Peng, Yan Hu, Fongci Lin, Xueqing Peng, Jimin Huang, Jeffrey Zhang, Vipina Kuttichi Keloth, Xingyu Zhou, Huan He, Lucila Ohno-Machido, Yonghui Wu, Hua Xu, Jiang Bian:
Me LLaMA: Foundation Large Language Models for Medical Applications. CoRR abs/2402.12749 (2024) - 2023
- [i3]Navya Martin Kollapally, Vipina Kuttichi Keloth, Julia Xu, James Geller:
Integrating Commercial and Social Determinants of Health: A Unified Ontology for Non-Clinical Determinants of Health. CoRR abs/2304.01446 (2023) - [i2]Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu:
Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR abs/2305.16326 (2023) - 2022
- [i1]Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao:
Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO). CoRR abs/2212.01941 (2022)
Coauthor Index
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