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Matthew Andres Moreno

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Journal Articles

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2024
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Anya E. Vostinar, Alexander Lalejini, Charles Ofria, Emily L. Dolson, Matthew Andres Moreno:
Empirical: A scientific software library for research, education, and public engagement. J. Open Source Softw. 9(98): 6617 (2024)
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Matthew Andres Moreno, Mark T. Holder, Jeet Sukumaran:
DendroPy 5: a mature Python library for phylogenetic computing. J. Open Source Softw. 9(101): 6943 (2024)
2023
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Matthew Andres Moreno, Alexander Lalejini, Charles Ofria:
Matchmaker, matchmaker, make me a match: geometric, variational, and evolutionary implications of criteria for tag affinity. Genet. Program. Evolvable Mach. 24(1): 4 (2023)
2022
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Matthew Andres Moreno, Emily L. Dolson, Charles Ofria:
hstrat: a Python Package for phylogenetic inference on distributed digital evolution populations. J. Open Source Softw. 7(80): 4866 (2022)
2021
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Alexander Lalejini, Matthew Andres Moreno, Charles Ofria:
Tag-based regulation of modules in genetic programming improves context-dependent problem solving. Genet. Program. Evolvable Mach. 22(3): 325-355 (2021)
2019
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Matthew Andres Moreno, Charles Ofria:
Toward Open-Ended Fraternal Transitions in Individuality. Artif. Life 25(2): 117-133 (2019)

Conference and Workshop Papers

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2024
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Matthew Andres Moreno, Connor Yang, Emily L. Dolson, Luis Zaman:
Trackable Island-model Genetic Algorithms at Wafer Scale. GECCO Companion 2024: 101-102
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Alexander Lalejini, Marcos Sanson, Jack Garbus, Matthew Andres Moreno, Emily L. Dolson:
Runtime phylogenetic analysis enables extreme subsampling for test-based problems. GECCO Companion 2024: 511-514
2023
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Matthew Andres Moreno, Alexander Lalejini, Charles Ofria:
Tag Affinity Criteria Influence Adaptive Evolution. GECCO Companion 2023: 35-36
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Matthew Andres Moreno:
Methods for Rich Phylogenetic Inference Over Distributed Sexual Populations. GPTP 2023: 125-141
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Alexander Lalejini, Matthew Andres Moreno, Jose Guadalupe Hernandez, Emily L. Dolson:
Phylogeny-Informed Fitness Estimation for Test-Based Parent Selection. GPTP 2023: 241-261
2022
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Alexander Lalejini, Matthew Andres Moreno, Charles Ofria:
Tag-based module regulation for genetic programming. GECCO Companion 2022: 25-26
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Matthew Andres Moreno, Emily L. Dolson, Charles Ofria:
Hereditary stratigraphy: genome annotations to enable phylogenetic inference over distributed populations. GECCO Companion 2022: 65-66
2021
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Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria:
Conduit: a C++ library for best-effort high performance computing. GECCO Companion 2021: 1795-1800
2018
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Matthew Andres Moreno, Wolfgang Banzhaf, Charles Ofria:
Learning an evolvable genotype-phenotype mapping. GECCO 2018: 983-990

Informal and Other Publications

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2024
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  - journals/corr/abs-2402-01610
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Alexander Lalejini, Marcos Sanson, Jack Garbus, Matthew Andres Moreno, Emily L. Dolson:
Runtime phylogenetic analysis enables extreme subsampling for test-based problems. CoRR abs/2402.01610 (2024)
[i18]
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  - journals/corr/abs-2403-00246
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Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson:
Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications. CoRR abs/2403.00246 (2024)
[i17]
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  - journals/corr/abs-2403-00266
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Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson:
Algorithms for Efficient, Compact Online Data Stream Curation. CoRR abs/2403.00266 (2024)
[i16]
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  - journals/corr/abs-2404-10854
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Matthew Andres Moreno:
Methods to Estimate Cryptic Sequence Complexity. CoRR abs/2404.10854 (2024)
[i15]
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  - journals/corr/abs-2404-10861
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Matthew Andres Moreno, Connor Yang, Emily L. Dolson, Luis Zaman:
Trackable Agent-based Evolution Models at Wafer Scale. CoRR abs/2404.10861 (2024)
[i14]
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  - journals/corr/abs-2405-03605
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Matthew Andres Moreno, Connor Yang, Emily L. Dolson, Luis Zaman:
Trackable Island-model Genetic Algorithms at Wafer Scale. CoRR abs/2405.03605 (2024)
[i13]
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  - journals/corr/abs-2405-07241
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Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria:
Case Study of Novelty, Complexity, and Adaptation in a Multicellular System. CoRR abs/2405.07241 (2024)
[i12]
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Matthew Andres Moreno, Santiago Rodriguez Papa, Emily L. Dolson:
Ecology, Spatial Structure, and Selection Pressure Induce Strong Signatures in Phylogenetic Structure. CoRR abs/2405.07245 (2024)
[i11]
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  - journals/corr/abs-2405-09389
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Emily L. Dolson, Santiago Rodriguez Papa, Matthew Andres Moreno:
Phylotrack: C++ and Python libraries for in silico phylogenetic tracking. CoRR abs/2405.09389 (2024)
[i10]
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  - journals/corr/abs-2405-10183
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Matthew Andres Moreno, Anika Ranjan, Emily L. Dolson, Luis Zaman:
A Guide to Tracking Phylogenies in Parallel and Distributed Agent-based Evolution Models. CoRR abs/2405.10183 (2024)
[i9]
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  - journals/corr/abs-2409-06199
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Matthew Andres Moreno, Luis Zaman, Emily L. Dolson:
Structured Downsampling for Fast, Memory-efficient Curation of Online Data Streams. CoRR abs/2409.06199 (2024)
2023
[i8]
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  - journals/corr/abs-2306-03970
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Alexander Lalejini, Matthew Andres Moreno, Jose Guadalupe Hernandez, Emily L. Dolson:
Phylogeny-informed fitness estimation. CoRR abs/2306.03970 (2023)
2022
[i7]
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  - journals/corr/abs-2211-10897
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Matthew Andres Moreno, Charles Ofria:
Best-Effort Communication Improves Performance and Scales Robustly on Conventional Hardware. CoRR abs/2211.10897 (2022)
2021
[i6]
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  - journals/corr/abs-2104-10081
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Matthew Andres Moreno, Charles Ofria:
Exploring Evolved Multicellular Life Histories in a Open-Ended Digital Evolution System. CoRR abs/2104.10081 (2021)
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  - journals/corr/abs-2105-10486
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Matthew Andres Moreno, Santiago Rodriguez Papa, Charles Ofria:
Conduit: A C++ Library for Best-effort High Performance Computing. CoRR abs/2105.10486 (2021)
[i4]
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  - journals/corr/abs-2108-00382
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Matthew Andres Moreno, Santiago Rodriguez Papa, Alexander Lalejini, Charles Ofria:
SignalGP-Lite: Event Driven Genetic Programming Library for Large-Scale Artificial Life Applications. CoRR abs/2108.00382 (2021)
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Matthew Andres Moreno, Alexander Lalejini, Charles Ofria:
Matchmaker, Matchmaker, Make Me a Match: Geometric, Variational, and Evolutionary Implications of Criteria for Tag Affinity. CoRR abs/2108.04507 (2021)
2020
[i2]
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  - journals/corr/abs-2012-09229
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Alexander Lalejini, Matthew Andres Moreno, Charles Ofria:
Tag-based Genetic Regulation for Genetic Programming. CoRR abs/2012.09229 (2020)
2018
[i1]
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  - journals/peerjpre/MorenoO18
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Matthew Andres Moreno, Charles Ofria:
Toward open-ended fraternal transitions in individuality. PeerJ Prepr. 6: e27275 (2018)

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