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Journal Articles
- 2022
[j8]Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong
, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol:
RResolver: efficient short-read repeat resolution within ABySS. BMC Bioinform. 23(1): 246 (2022)- [j7]Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol:
btllib: A C++ library with Python interface for efficient genomic sequence processing. J. Open Source Softw. 7(79): 4720 (2022) - 2021
- [j6]Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolic, René L. Warren, Inanç Birol:
LongStitch: high-quality genome assembly correction and scaffolding using long reads. BMC Bioinform. 22(3): 534 (2021) - 2020
- [j5]Lauren Coombe, Vladimir Nikolic, Justin Chu, Inanç Birol, René L. Warren:
ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs. Bioinform. 36(12): 3885-3887 (2020) - 2019
- [j4]René L. Warren, Lauren Coombe, Hamid Mohamadi, Jessica Zhang, Barry Jaquish, Nathalie Isabel, Steven J. M. Jones, Jean Bousquet, Jörg Bohlmann, Inanç Birol:
ntEdit: scalable genome sequence polishing. Bioinform. 35(21): 4430-4432 (2019) - 2018
- [j3]Sarah Yeo, Lauren Coombe, René L. Warren, Justin Chu, Inanç Birol:
ARCS: scaffolding genome drafts with linked reads. Bioinform. 34(5): 725-731 (2018) - [j2]Lauren Coombe, Jessica Zhang, Benjamin P. Vandervalk, Justin Chu, Shaun D. Jackman, Inanç Birol, René L. Warren:
ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers. BMC Bioinform. 19(1): 234:1-234:10 (2018) - [j1]Shaun D. Jackman, Lauren Coombe, Justin Chu, René L. Warren, Benjamin P. Vandervalk, Sarah Yeo, Zhuyi Xue, Hamid Mohamadi, Jörg Bohlmann, Steven J. M. Jones, Inanç Birol:
Tigmint: correcting assembly errors using linked reads from large molecules. BMC Bioinform. 19(1): 393:1-393:10 (2018)
Coauthor Index
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