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2020 – today
- 2022
[j4]Parham Kazemi
, Johnathan Wong, Vladimir Nikolic, Hamid Mohamadi, René L. Warren, Inanç Birol:
ntHash2: recursive spaced seed hashing for nucleotide sequences. Bioinform. 38(20): 4812-4813 (2022)- [j3]Vladimir Nikolic, Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip, René L. Warren, Inanç Birol:
RResolver: efficient short-read repeat resolution within ABySS. BMC Bioinform. 23(1): 246 (2022) - [j2]Vladimir Nikolic, Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu, René L. Warren, Inanç Birol:
btllib: A C++ library with Python interface for efficient genomic sequence processing. J. Open Source Softw. 7(79): 4720 (2022) - 2021
- [j1]Lauren Coombe, Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolic, René L. Warren, Inanç Birol:
LongStitch: high-quality genome assembly correction and scaffolding using long reads. BMC Bioinform. 22(3): 534 (2021) - 2020
- [c1]Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen, Johnathan Wong, William Hsiao, Cédric Chauve, Leonid Chindelevitch:
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. AlCoB 2020: 108-124
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