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ORCIDRashmie Abeysinghe
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Journal Articles
- 2024
[j11]Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D. Lhatoo, Licong Cui:
Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies. J. Biomed. Semant. 15(1): 6 (2024)- [j10]Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Paul E. Schulz, Licong Cui
:
Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements. BMC Medical Informatics Decis. Mak. 24(3): 103 (2024) - 2023
- [j9]Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui:
A deep learning approach to identify missing is-a relations in SNOMED CT. J. Am. Medical Informatics Assoc. 30(3): 475-484 (2023) - [j8]Xubing Hao, Rashmie Abeysinghe, Kirk Roberts, Licong Cui:
Logical definition-based identification of potential missing concepts in SNOMED CT. BMC Medical Informatics Decis. Mak. 23(1): 87 (2023) - 2022
- [j7]Rashmie Abeysinghe, Yuntao Yang, Mason Bartels, W. Jim Zheng, Licong Cui:
An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations. Briefings Bioinform. 23(3) (2022) - [j6]Warren Manuel, Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui:
Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs. J. Biomed. Semant. 13(1): 22 (2022) - [j5]Rashmie Abeysinghe, Adam Black, Denys Kaduk, Yupeng Li, Christian Reich, Alexander Davydov, Lixia Yao, Licong Cui:
Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method. J. Biomed. Informatics 134: 104162 (2022) - 2021
- [j4]Fengbo Zheng, Rashmie Abeysinghe, Licong Cui:
Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis. BMC Medical Informatics Decis. Mak. 21-S(7): 234 (2021) - 2020
- [j3]Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui:
SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology. Bioinform. 36(10): 3207-3214 (2020) - [j2]Fengbo Zheng, Rashmie Abeysinghe, Nicholas Sioutos, Lori Whiteman, Lyubov Remennik, Licong Cui:
Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach. BMC Medical Informatics Decis. Mak. 20-S(10): 273 (2020) - 2018
- [j1]Rashmie Abeysinghe, Licong Cui:
Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource. BMC Medical Informatics Decis. Mak. 18(S-2): 89-100 (2018)
Conference and Workshop Papers
- 2024
- [c15]Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui:
Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS. AIME (1) 2024: 273-278 - 2022
- [c14]Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui:
Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology. AMIA 2022 - [c13]Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui:
A substring replacement approach for identifying missing IS-A relations in SNOMED CT. BIBM 2022: 2611-2618 - [c12]Maryamsadat Mohtashamian, Rashmie Abeysinghe, Xubing Hao, Licong Cui:
Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology. BIBM 2022: 3274-3279 - [c11]Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang:
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI 2022: 465-468 - 2021
- [c10]Rashmie Abeysinghe, Fengbo Zheng, Licong Cui:
A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology. AMIA 2021 - [c9]Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui:
Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT. BIBM 2021: 1805-1812 - 2019
- [c8]Rashmie Abeysinghe, Michael A. Brooks, Licong Cui:
Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus. AMIA 2019 - [c7]Fengbo Zheng, Rashmie Abeysinghe, Licong Cui:
A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus. BIBM 2019: 1948-1953 - [c6]Jing Liu, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui:
Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature. ICHI 2019: 1-7 - 2018
- [c5]Rashmie Abeysinghe, Xufeng Qu, Licong Cui:
Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels. AMIA 2018 - [c4]Rashmie Abeysinghe, Fengbo Zheng, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui:
A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies. BIBM 2018: 1982-1989 - 2017
- [c3]Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui:
Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns. AMIA 2017 - [c2]Rashmie Abeysinghe, Licong Cui:
Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource. BIBM 2017: 1238-1241 - [c1]Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui:
Auditing subtype inconsistencies among gene ontology concepts. BIBM 2017: 1242-1245
Coauthor Index
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