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2020 – today
- 2024
[j8]Issar Arab
, Kristof Egghe, Kris Laukens, Ke Chen, Khaled H. Barakat, Wout Bittremieux:
Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction. J. Chem. Inf. Model. 64(7): 2515-2527 (2024)- [j7]Issar Arab, Kris Laukens, Wout Bittremieux:
Semisupervised Learning to Boost hERG, Nav1.5, and Cav1.2 Cardiac Ion Channel Toxicity Prediction by Mining a Large Unlabeled Small Molecule Data Set. J. Chem. Inf. Model. 64(16): 6410-6420 (2024) - [j6]Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Niema Moshiri, Tajana Simunic Rosing:
DRAM-Based Acceleration of Open Modification Search in Hyperdimensional Space. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 43(9): 2592-2605 (2024) - [c3]Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing:
SpecHD: Hyperdimensional Computing Framework for FPGA-Based Mass Spectrometry Clustering. DATE 2024: 1-6 - [i3]Sumukh Pinge, Weihong Xu, Wout Bittremieux, Niema Moshiri, Sang-Woo Jun, Tajana Rosing:
RapidOMS: FPGA-based Open Modification Spectral Library Searching with HD Computing. CoRR abs/2409.13361 (2024) - 2023
- [j5]Ceder Dens, Kris Laukens, Wout Bittremieux, Pieter Meysman:
The pitfalls of negative data bias for the T-cell epitope specificity challenge. Nat. Mac. Intell. 5(10): 1060-1062 (2023) - [i2]Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing:
SpecHD: Hyperdimensional Computing Framework for FPGA-based Mass Spectrometry Clustering. CoRR abs/2311.12874 (2023) - 2022
- [c2]Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing:
Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing. PACT 2022: 536-537 - [c1]Melih Yilmaz, William Fondrie, Wout Bittremieux, Sewoong Oh, William S. Noble:
De novo mass spectrometry peptide sequencing with a transformer model. ICML 2022: 25514-25522 - [i1]Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing:
Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing. CoRR abs/2211.16422 (2022) - 2021
- [j4]Pieter Moris, Joey De Pauw, Anna Postovskaya, Sofie Gielis, Nicolas De Neuter, Wout Bittremieux, Benson Ogunjimi, Kris Laukens, Pieter Meysman:
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification. Briefings Bioinform. 22(4) (2021)
2010 – 2019
- 2019
- [j3]Pieter Meysman, Yvan Saeys, Ehsan Sabaghian, Wout Bittremieux, Yves Van de Peer, Bart Goethals, Kris Laukens:
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1496-1507 (2019) - 2018
- [j2]Aida Mrzic, Pieter Meysman, Wout Bittremieux, Pieter Moris, Boris Cule, Bart Goethals, Kris Laukens:
Grasping frequent subgraph mining for bioinformatics applications. BioData Min. 11(1): 20:1-20:24 (2018) - 2017
- [b1]Wout Bittremieux:
Computational solutions for quality control of mass spectrometry-based proteomics. University of Antwerp, Belgium, 2017 - 2015
- [j1]Stefan Naulaerts, Pieter Meysman, Wout Bittremieux, Trung-Nghia Vu, Wim Vanden Berghe, Bart Goethals, Kris Laukens:
A primer to frequent itemset mining for bioinformatics. Briefings Bioinform. 16(2): 216-231 (2015)
Coauthor Index
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