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ORCIDTomás Pluskal
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- affiliation: Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic
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2020 – today
- 2024
[c1]Anton Bushuiev, Roman Bushuiev, Petr Kouba, Anatolii Filkin, Marketa Gabrielova, Michal Gabriel, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic:
Learning to design protein-protein interactions with enhanced generalization. ICLR 2024- [i3]Anton Bushuiev, Roman Bushuiev, Jirí Sedlár
, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic:
Revealing data leakage in protein interaction benchmarks. CoRR abs/2404.10457 (2024) - [i2]Roman Bushuiev, Anton Bushuiev, Niek F. de Jonge, Adamo Young, Fleming Kretschmer, Raman Samusevich, Janne Heirman, Fei Wang, Luke Zhang, Kai Dührkop, Marcus Ludwig, Nils A. Haupt, Apurva Kalia, Corinna Brungs, Robin Schmid, Russell Greiner, Bo Wang, David S. Wishart, Li-Ping Liu, Juho Rousu, Wout Bittremieux, Hannes Rost, Tytus D. Mak, Soha Hassoun, Florian Huber, Justin J. J. van der Hooft, Michael A. Stravs, Sebastian Böcker, Josef Sivic, Tomás Pluskal:
MassSpecGym: A benchmark for the discovery and identification of molecules. CoRR abs/2410.23326 (2024) - 2023
- [j4]Timothy R. Fallon, Tereza Calounová, Martin Mokrejs, Jing-Ke Weng, Tomás Pluskal:
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. BMC Bioinform. 24(1): 133 (2023) - [i1]Anton Bushuiev, Roman Bushuiev, Anatolii Filkin, Petr Kouba, Marketa Gabrielova, Michal Gabriel, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic:
Learning to design protein-protein interactions with enhanced generalization. CoRR abs/2310.18515 (2023)
2010 – 2019
- 2017
- [j3]Egon L. Willighagen, John W. Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomás Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain M. Torrance, Chris T. A. Evelo, Rajarshi Guha, Christoph Steinbeck:
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminformatics 9(1): 33:1-33:19 (2017) - [j2]Egon L. Willighagen, John W. Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomás Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain M. Torrance, Chris T. A. Evelo, Rajarshi Guha, Christoph Steinbeck:
Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminformatics 9(1): 53 (2017) - 2010
- [j1]Tomás Pluskal, Sandra Castillo, Alejandro Villar-Briones, Matej Oresic:
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinform. 11: 395 (2010)
Coauthor Index
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