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2020 – today
- 2023
[j8]Bede Constantinides
, Martin Hunt, Derrick W. Crook:
Hostile: accurate decontamination of microbial host sequences. Bioinform. 39(12) (2023)- 2021
- [j7]Yang Yang, Timothy M. Walker, Samaneh Kouchaki, Chenyang Wang, Timothy E. A Peto, Derrick W. Crook, David A. Clifton:
An end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction. Briefings Bioinform. 22(6) (2021) - 2020
- [j6]Yifei Xu, Fan Yang-Turner, Denis Volk, Derrick W. Crook:
NanoSPC: a scalable, portable, cloud compatible viral nanopore metagenomic data processing pipeline. Nucleic Acids Res. 48(Webserver-Issue): W366-W371 (2020)
2010 – 2019
- 2019
- [j5]Samaneh Kouchaki, Yang Yang, Timothy M. Walker, A. Sarah Walker, Daniel J. Wilson, Timothy E. A Peto, Derrick W. Crook, CRyPTIC Consortium, David A. Clifton:
Application of machine learning techniques to tuberculosis drug resistance analysis. Bioinform. 35(13): 2276-2282 (2019) - [j4]Yang Yang, Timothy M. Walker, A. Sarah Walker, Daniel J. Wilson, Timothy E. A Peto, Derrick W. Crook, Farah Shamout, CRyPTIC Consortium, Tingting Zhu, David A. Clifton:
DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis. Bioinform. 35(18): 3240-3249 (2019) - [c3]Fan Yang-Turner, Denis Volk, Philip Fowler, Jeremy Swann, Matthew Bull, Sarah Hoosdally, Thomas Connor, Tim E. A. Peto, Derrick W. Crook:
Scalable Pathogen Pipeline Platform (SP3): Enabling Unified Genomic Data Analysis with Elastic Cloud Computing. CLOUD 2019: 478-480 - 2018
- [j3]Yang Yang, Katherine E. Niehaus, Timothy M. Walker, Zamin Iqbal, A. Sarah Walker, Daniel J. Wilson, Tim E. A. Peto, Derrick W. Crook, E. Grace Smith, Tingting Zhu, David A. Clifton:
Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data. Bioinform. 34(10): 1666-1671 (2018) - [c2]Fan Yang-Turner, Lawrence Gripper, Jeremy Swann, Trien Do, Dona Foster, Denis Volk, Anita Ramanan, Marcus Robinson, Tim E. A. Peto, Derrick W. Crook:
An Open-Source Azure Solution for Scalable Genomics Workflows. SERVICES 2018: 39-40 - 2017
- [j2]Oriol Mazariegos-Canellas, Trien Do, Tim E. A. Peto, David W. Eyre, Anthony Underwood, Derrick W. Crook, David H. Wyllie:
BugMat and FindNeighbour: command line and server applications for investigating bacterial relatedness. BMC Bioinform. 18(1): 477 (2017) - 2014
- [c1]Katherine E. Niehaus, Timothy M. Walker, Derrick W. Crook, Tim E. A. Peto, David A. Clifton:
Machine learning for the prediction of antibacterial susceptibility in Mycobacterium tuberculosis. BHI 2014: 618-621 - 2013
- [j1]David W. Eyre, Madeleine L. Cule, David Griffiths, Derrick W. Crook, Tim E. A. Peto, A. Sarah Walker, Daniel J. Wilson:
Detection of Mixed Infection from Bacterial Whole Genome Sequence Data Allows Assessment of Its Role in Clostridium difficile Transmission. PLoS Comput. Biol. 9(5) (2013)
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