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2020 – today
- 2024
[j8]Tao Tang, Kai Lu, Lin Peng, Yingbo Cui, Jianbin Fang, Chun Huang, Ruibo Wang, Canqun Yang, Yifei Guo:
SNCL: a supernode OpenCL implementation for hybrid computing arrays. J. Supercomput. 80(7): 9471-9493 (2024)- 2023
- [c9]Yufei Guo, Xinjie An, Shijie Li, Yingbo Cui, Peng Zhang, Biao Long, Shanshan Li:
MTMap: A Long-Read Alignment Tool based on Multi-Core DSPs. BIBM 2023: 863-866 - [c8]Yanlong Qiu
, Siqi Wang, Xi Yang, Xinyuan Qiu, Chengkun Wu, Yingbo Cui, Canqun Yang:
DrugProtKGE: Weakly Supervised Knowledge Graph Embedding for Highly-Effective Drug-Protein Interaction Representation. BIBM 2023: 1386-1393 - [c7]Kun Ran, Yingbo Cui, Zihang Wang, Shaoliang Peng:
Performance Evaluation of Spark, Ray and MPI: A Case Study on Long Read Alignment Algorithm. ICA3PP (3) 2023: 57-76 - 2022
- [j7]Zihang Wang, Yingbo Cui, Shaoliang Peng, Xiangke Liao, Yangbo Yu:
MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data. Comput. Biol. Chem. 99: 107735 (2022) - [c6]Weiming Xiang, Yingbo Cui, Yaning Yang, Ang Zhang, Boya Ji, Shaoliang Peng:
MSVF: Multi-task Structure Variation Filter with Transfer Learning in High-throughput Sequencing. BIBM 2022: 293-296 - 2021
- [j6]Yingbo Cui, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Canqun Yang:
VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments. BMC Bioinform. 22(1): 344 (2021) - [j5]Yingbo Cui, Xiaolong Cheng, Qing Chen, Bicna Song, Anthony Chiu, Yuan Gao, Tyson Dawson, Lumen Chao, Wubing Zhang, Dian Li, Zexiang Zeng, Jijun Yu, Zexu Li, Teng Fei, Shaoliang Peng, Wei Li:
CRISP-view: a database of functional genetic screens spanning multiple phenotypes. Nucleic Acids Res. 49(Database-Issue): D848-D854 (2021) - [c5]Weiming Xiang, Dong Chen, Yingbo Cui, Shaoliang Peng:
H-VAE: A Hybrid Variational AutoEncoder with Data Augmentation in Predicting CRISPR/Cas9 Off-target. BIBM 2021: 550-555 - [c4]Zeyu Xia, Yingbo Cui, Ang Zhang, Peng Zhang, Sifan Long, Tao Tang, Lin Peng, Chun Huang, Canqun Yang, Xiangke Liao:
Large-Scale Parallel Alignment Algorithm for SMRT Reads. ICA3PP (2) 2021: 213-229
2010 – 2019
- 2019
- [j4]Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang, Tenglilang Zhang, Weiguo Liu, Xingming Zhao:
A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 425-433 (2019) - 2018
- [j3]Shaoliang Peng, Minxia Cheng, Kaiwen Huang, Yingbo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shunyun Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi:
Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture. BMC Bioinform. 19-S(9): 185-194 (2018) - [j2]Yingbo Cui, Shaoliang Peng, Yutong Lu, Xiaoqian Zhu, Bingqiang Wang, Chengkun Wu, Xiangke Liao:
mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection. IEEE Trans. Parallel Distributed Syst. 29(11): 2557-2567 (2018) - 2015
- [j1]Xiangke Liao, Shaoliang Peng, Yutong Lu, Yingbo Cui, Chengkun Wu, Heng Wang, Jiajun Wen:
Neo-hetergeneous Programming and Parallelized Optimization of a Human Genome Re-sequencing Analysis Software Pipeline on TH-2 Supercomputer. Supercomput. Front. Innov. 2(1): 73-83 (2015) - [c3]Shaoliang Peng, Xiangke Liao, Canqun Yang, Yutong Lu, Jie Liu, Yingbo Cui, Heng Wang, Chengkun Wu, Bingqiang Wang:
The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer. CCGRID 2015: 823-828 - [c2]Yingbo Cui, Xiangke Liao, Shaoliang Peng, Yutong Lu, Canqun Yang, Bingqiang Wang, Chengkun Wu:
Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2. ISC 2015: 74-86 - 2014
- [c1]Yingbo Cui, Xiangke Liao, Xiaoqian Zhu, Bingqiang Wang, Shaoliang Peng:
mBWA: A Massively Parallel Sequence Reads Aligner. PACBB 2014: 113-120
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