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Journal Articles
- 2021
[j5]Vinnu Bhardwaj
, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova:
Trace Reconstruction Problems in Computational Biology. IEEE Trans. Inf. Theory 67(6): 3295-3314 (2021)- 2020
- [j4]Vinnu Bhardwaj, Massimo Franceschetti, Ramesh Rao, Pavel A. Pevzner, Yana Safonova:
Automated analysis of immunosequencing datasets reveals novel immunoglobulin D genes across diverse species. PLoS Comput. Biol. 16(4) (2020) - 2015
- [j3]Yana Safonova, Stefano Bonissone, Eugene Kurpilyansky, Ekaterina Starostina, Alla L. Lapidus, Jeremy Stinson, Laura DePalatis, Wendy Sandoval, Jennie Lill, Pavel A. Pevzner:
IgRepertoireConstructor: a novel algorithm for antibody repertoire construction and immunoproteogenomics analysis. Bioinform. 31(12): 53-61 (2015) - [j2]Yana Safonova, Alla L. Lapidus, Jennie Lill:
IgSimulator: a versatile immunosequencing simulator. Bioinform. 31(19): 3213-3215 (2015) - [j1]Yana Safonova, Anton Bankevich, Pavel A. Pevzner:
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. J. Comput. Biol. 22(6): 528-545 (2015)
Conference and Workshop Papers
- 2017
- [c2]Alexander Shlemov, Sergey Bankevich, Andrey V. Bzikadze, Yana Safonova, Pavel A. Pevzner:
Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Datasets. RECOMB 2017: 396-397 - 2014
- [c1]Yana Safonova, Anton Bankevich, Pavel A. Pevzner:
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes. RECOMB 2014: 265-279
Informal and Other Publications
- 2020
- [i1]Vinnu Bhardwaj, Pavel A. Pevzner, Cyrus Rashtchian, Yana Safonova:
Trace Reconstruction Problems in Computational Biology. CoRR abs/2010.06083 (2020)
Coauthor Index
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