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ORCIDColin N. Dewey
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- affiliation: University of Wisconsin, USA
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2020 – today
- 2023
[j14]Huishi Toh, Atefeh Bagheri
, Colin N. Dewey, Ron M. Stewart, Lili Yan, Dennis Clegg, James A. Thomson, Peng Jiang:
A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP). Comput. Biol. Chem. 102: 107795 (2023)
2010 – 2019
- 2017
- [j13]Matthew Bernstein, AnHai Doan, Colin N. Dewey:
MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive. Bioinform. 33(18): 2914-2923 (2017) - 2015
- [j12]Ning Leng, Yuan Li, Brian E. McIntosh, Bao Kim Nguyen, Bret Duffin, Shulan Tian, James A. Thomson, Colin N. Dewey, Ron M. Stewart, Christina Kendziorski:
EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments. Bioinform. 31(16): 2614-2622 (2015) - [j11]Xin Zeng, Bo Li, Rene Welch, Constanza Rojo, Ye Zheng, Colin N. Dewey, Sündüz Keles:
Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping. PLoS Comput. Biol. 11(10) (2015) - 2013
- [j10]Laura H. LeGault, Colin N. Dewey:
Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs. Bioinform. 29(18): 2300-2310 (2013) - [j9]Ron M. Stewart, Cynthia Alexander Rascón, Shulan Tian, Jeff Nie, Chris Barry, Li-Fang Chu, Hamisha Ardalani, Ryan J. Wagner, Mitchell D. Probasco, Jennifer M. Bolin, Ning Leng, Srikumar Sengupta, Michael Volkmer, Bianca Habermann, Elly M. Tanaka, James A. Thomson, Colin N. Dewey:
Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema. PLoS Comput. Biol. 9(3) (2013) - 2011
- [j8]Colin N. Dewey:
Positional orthology: putting genomic evolutionary relationships into context. Briefings Bioinform. 12(5): 401-412 (2011) - [j7]Bo Li, Colin N. Dewey:
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinform. 12: 323 (2011) - [j6]Dongjun Chung, Pei Fen Kuan, Bo Li, Rajendran Sanalkumar, Kun Liang, Emery H. Bresnick, Colin N. Dewey, Sündüz Keles:
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data. PLoS Comput. Biol. 7(7) (2011) - [j5]Danielle Albers, Colin N. Dewey, Michael Gleicher:
Sequence Surveyor: Leveraging Overview for Scalable Genomic Alignment Visualization. IEEE Trans. Vis. Comput. Graph. 17(12): 2392-2401 (2011) - 2010
- [j4]Bo Li, Victor Ruotti, Ron M. Stewart, James A. Thomson, Colin N. Dewey:
RNA-Seq gene expression estimation with read mapping uncertainty. Bioinform. 26(4): 493-500 (2010) - [j3]Bret R. Larget, Satish K. Kotha, Colin N. Dewey, Cécile Ané:
BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis. Bioinform. 26(22): 2910-2911 (2010)
2000 – 2009
- 2009
- [j2]Robert K. Bradley, Adam Roberts, Michael E. Smoot, Sudeep Juvekar, Jaeyoung Do, Colin N. Dewey, Ian H. Holmes, Lior Pachter:
Fast Statistical Alignment. PLoS Comput. Biol. 5(5) (2009) - [c1]Raman Arora, Colin N. Dewey, William A. Sethares:
Reconstructing latent periods in genome sequences with insertions and deletions. GENSiPS 2009: 1-4 - 2006
- [j1]Colin N. Dewey, Peter Huggins, Kevin Woods, Bernd Sturmfels, Lior Pachter:
Parametric Alignment of Drosophila Genomes. PLoS Comput. Biol. 2(6) (2006)
Coauthor Index
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