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ORCIDMansoor A. S. Saqi
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2010 – 2019
- 2019
[j23]Mansoor A. S. Saqi
, Artem Lysenko, Yike Guo, Tatsuhiko Tsunoda, Charles Auffray:
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures. Briefings Bioinform. 20(2): 609-623 (2019)- 2018
- [j22]Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray:
A computational framework for complex disease stratification from multiple large-scale datasets. BMC Syst. Biol. 12(1): 60:1-60:23 (2018) - 2017
- [j21]Irina Balaur, Alexander Mazein, Mansoor A. S. Saqi, Artem Lysenko, Christopher J. Rawlings:
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks. Bioinform. 33(7): 1096-1098 (2017) - [j20]Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray:
EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. J. Comput. Biol. 24(10): 969-980 (2017) - 2016
- [j19]Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray:
Representing and querying disease networks using graph databases. BioData Min. 9: 23 (2016) - [j18]Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray:
STON: exploring biological pathways using the SBGN standard and graph databases. BMC Bioinform. 17: 494:1-494:9 (2016) - 2014
- [j17]Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi:
Protein interaction networks associated with cardiovascular disease and cancer: exploring the effect of bias on shared network properties. Int. J. Data Min. Bioinform. 9(4): 339-357 (2014) - 2013
- [c4]Valeria Bo, Artem Lysenko, Mansoor A. S. Saqi, Dimah Z. Habash, Allan Tucker:
Integrating Multiple Studies of Wheat Microarray Data to Identify Treatment-Specific Regulatory Networks. IDA 2013: 104-115 - 2012
- [c3]Laura Bennett, Artem Lysenko, Lazaros G. Papageorgiou, Martin Urban, Kim E. Hammond-Kosack, Christopher J. Rawlings, Mansoor A. S. Saqi, Sophia Tsoka:
Detection of Multi-clustered Genes and Community Structure for the Plant Pathogenic Fungus Fusarium graminearum. CMSB 2012: 69-86 - 2011
- [j16]Artem Lysenko, Michael Defoin-Platel, Keywan Hassani-Pak, Jan Taubert, Charlie Hodgman, Christopher J. Rawlings, Mansoor A. S. Saqi:
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis. BMC Bioinform. 12: 203 (2011) - [j15]Michael Defoin-Platel, Matthew Morritt Hindle, Artem Lysenko, Stephen J. Powers, Dimah Z. Habash, Christopher J. Rawlings, Mansoor A. S. Saqi:
AIGO: Towards a unified framework for the Analysis and the Inter-comparison of GO functional annotations. BMC Bioinform. 12: 431 (2011) - 2010
- [j14]Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings:
Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases. Briefings Bioinform. 11(2): 265 (2010) - [c2]Fabrizio Smeraldi, Michael Defoin-Platel, Mansoor A. S. Saqi:
Handling Missing Features with Boosting Algorithms for Protein-Protein Interaction Prediction. DILS 2010: 132-147
2000 – 2009
- 2009
- [j13]Artem Lysenko, Matthew Morritt Hindle, Jan Taubert, Mansoor A. S. Saqi, Christopher J. Rawlings:
Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases. Briefings Bioinform. 10(6): 676-693 (2009) - [j12]Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi:
Global sequence properties for superfamily prediction: a machine learning approach. J. Integr. Bioinform. 6(1) (2009) - [j11]Mansoor A. S. Saqi, Richard J. B. Dobson, Preben Kraben, David A. Hodgson, David L. Wild:
An approach to pathway reconstruction using whole genome metabolic models and sensitive sequence searching. J. Integr. Bioinform. 6(1) (2009) - 2008
- [c1]Richard J. B. Dobson, Patricia B. Munroe, Charles A. Mein, Mark J. Caulfield, Mansoor A. S. Saqi:
Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related Proteins. BIRD 2008: 377-391 - 2006
- [j10]James A. Casbon, Gavin E. Crooks, Mansoor A. S. Saqi:
A high level interface to SCOP and ASTRAL implemented in Python. BMC Bioinform. 7: 10 (2006) - [j9]James A. Casbon, Mansoor A. S. Saqi:
On single and multiple models of protein families for the detection of remote sequence relationships. BMC Bioinform. 7: 48 (2006) - [j8]Richard J. B. Dobson, Patricia B. Munroe, Mark J. Caulfield, Mansoor A. S. Saqi:
Predicting deleterious nsSNPs: an analysis of sequence and structural attributes. BMC Bioinform. 7: 217 (2006) - [j7]James A. Casbon, Mansoor A. S. Saqi:
Functional diversity within protein superfamilies. J. Integr. Bioinform. 3(2) (2006) - 2005
- [j6]James A. Casbon, Mansoor A. S. Saqi:
S4: structure-based sequence alignments of SCOP superfamilies. Nucleic Acids Res. 33(Database-Issue): 219-222 (2005) - 2004
- [j5]James A. Casbon, Mansoor A. S. Saqi:
Analysis of superfamily specific profile-profile recognition accuracy. BMC Bioinform. 5: 200 (2004)
1990 – 1999
- 1999
- [j4]Mansoor A. S. Saqi, David L. Wild, M. J. Hartshorn:
Protein analyst - a distributed object environment for protein sequence and structure analysis. Bioinform. 15(6): 521-522 (1999) - 1997
- [j3]Ross D. King, Mansoor A. S. Saqi, Roger A. Sayle, Michael J. E. Sternberg:
DSC: public domain protein secondary structure predication. Comput. Appl. Biosci. 13(4): 473-474 (1997) - 1995
- [j2]Roger A. Sayle, Mansoor A. S. Saqi, M. Weir, Andrew Lyall:
PdbAlign, PdbDist and DistAlign: tools to aid in relating sequence variability to structure. Comput. Appl. Biosci. 11(5): 571-573 (1995) - 1994
- [j1]Mansoor A. S. Saqi, Roger A. Sayle:
PdbMotif--a tool for the automatic identification and display of motifs in protein structures. Comput. Appl. Biosci. 10(5): 545-546 (1994)
Coauthor Index
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