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Journal Articles
- 2012
[j14]Anne Morgat
, Eric Coissac, Elisabeth Coudert, Kristian B. Axelsen, Guillaume Keller, Amos Bairoch, Alan J. Bridge, Lydie Bougueleret, Ioannis Xenarios, Alain Viari:
UniPathway: a resource for the exploration and annotation of metabolic pathways. Nucleic Acids Res. 40(Database-Issue): 761-769 (2012)- [j13]Adam Alexander Thil Smith, Eugeni Belda, Alain Viari, Claudine Médigue, David Vallenet:
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes. PLoS Comput. Biol. 8(5) (2012) - 2011
- [j12]Yves-Pol Deniélou, Marie-France Sagot, Frédéric Boyer, Alain Viari:
Bacterial syntenies: an exact approach with gene quorum. BMC Bioinform. 12: 193 (2011) - 2007
- [j11]Guillaume Achaz, Frédéric Boyer, Eduardo P. C. Rocha, Alain Viari, Eric Coissac:
Repseek, a tool to retrieve approximate repeats from large DNA sequences. Bioinform. 23(1): 119-121 (2007) - 2006
- [j10]Patrick Durand, Laurent Labarre, Alain Meil, Jean-Louis Divol, Yves Vandenbrouck, Alain Viari, Jérôme Wojcik:
GenoLink: a graph-based querying and browsing system for investigating the function of genes and proteins. BMC Bioinform. 7: 21 (2006) - [j9]Stéphane Descorps-Declère, Danielle Ziébelin, François Rechenmann, Alain Viari:
Genepi: a blackboard framework for genome annotation. BMC Bioinform. 7: 450 (2006) - 2005
- [j8]Frédéric Boyer, Anne Morgat, Laurent Labarre, Joël Pothier, Alain Viari:
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data. Bioinform. 21(23): 4209-4215 (2005) - 1999
- [j7]Claudine Médigue, François Rechenmann, Antoine Danchin, Alain Viari:
Imagene: an integrated computer environment for sequence annotation and analysis. Bioinform. 15(1): 2-15 (1999) - 1998
- [j6]V. Escalier, Joël Pothier, Henry Soldano, Alain Viari:
Pairwide and Multiple Identification of Three-Dimensional Common Substructures in Proteins. J. Comput. Biol. 5(1): 41-56 (1998) - 1997
- [j5]Marie-France Sagot, Alain Viari, Henry Soldano:
Multiple Sequence Comparison - A Peptide Matching Approach. Theor. Comput. Sci. 180(1-2): 115-137 (1997) - 1995
- [j4]Marie-France Sagot, Alain Viari, Joël Pothier, Henry Soldano:
Finding flexible patterns in a text: an application to three-dimensional molecular matching. Comput. Appl. Biosci. 11(1): 59-70 (1995) - [j3]Henry Soldano, Alain Viari, Marc Champesme:
Searching for flexible repeated patterns using a non-transitive similarity relation. Pattern Recognit. Lett. 16(3): 233-246 (1995) - 1991
- [j2]E. Ollivier, Henry Soldano, Alain Viari:
'Multifrequency' location and clustering of sequence patterns from proteins. Comput. Appl. Biosci. 7(1): 31-38 (1991) - 1990
- [j1]Alain Viari, Henry Soldano, E. Ollivier:
A scale-independent signal processing method for sequence analysis. Comput. Appl. Biosci. 6(2): 71-80 (1990)
Conference and Workshop Papers
- 2009
- [c9]Yves-Pol Deniélou, Frédéric Boyer, Alain Viari, Marie-France Sagot:
Multiple Alignment of Biological Networks: A Flexible Approach. CPM 2009: 263-273 - 2006
- [c8]Samuel Drulhe, Giancarlo Ferrari-Trecate, Hidde de Jong, Alain Viari:
Reconstruction of Switching Thresholds in Piecewise-Affine Models of Genetic Regulatory Networks. HSCC 2006: 184-199 - 2003
- [c7]Frédéric Boyer, Alain Viari:
Ab initio reconstruction of metabolic pathways. ECCB 2003: 26-34 - [c6]Alain Viari:
How Does Computer Science Change Molecular Biology? STACS 2003: 13 - 1997
- [c5]Marie-France Sagot, Alain Viari:
Flexible Identification of Structural Objects in Nucleic Acid Sequences: Palindromes, Mirror Repeats, Pseudoknots and Triple Helices. CPM 1997: 224-246 - 1996
- [c4]Marie-France Sagot, Alain Viari:
A Double Combinatorial Approach to Discovering Patterns in Biological Sequences. CPM 1996: 186-208 - 1995
- [c3]Marie-France Sagot, Alain Viari, Henry Soldano:
Multiple Sequence Comparison: A Peptide Matching Approach. CPM 1995: 366-385 - [c2]Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin:
Cooperative Computer System For Genome Sequence Analysis. ISMB 1995: 249-258 - [c1]Marie-France Sagot, Alain Viari, Henry Soldano:
A Distance-Based Block Searching Algorithm. ISMB 1995: 322-331
Coauthor Index
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