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Journal Articles
- 2022
[j8]Christopher I. Jarvis
, Amy Gimma, Flavio Finger, Tim P. Morris, Jennifer A. Thompson, Olivier Le Polain de Waroux, W. John Edmunds, Sebastian Funk, Thibaut Jombart:
Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics. PLoS Comput. Biol. 18(5) (2022)- 2019
- [j7]Finlay Campbell, Anne Cori, Neil M. Ferguson, Thibaut Jombart:
Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data. PLoS Comput. Biol. 15(3) (2019) - 2018
- [j6]Finlay Campbell, Xavier Didelot, Richard G. FitzJohn, Neil M. Ferguson, Anne Cori, Thibaut Jombart:
outbreaker2: a modular platform for outbreak reconstruction. BMC Bioinform. 19-S(11): 363:1-363:8 (2018) - [j5]Anne Cori, Pierre Nouvellet, Tini Garske, Hervé Bourhy, Emmanuel Nakouné, Thibaut Jombart:
A graph-based evidence synthesis approach to detecting outbreak clusters: An application to dog rabies. PLoS Comput. Biol. 14(12) (2018) - 2014
- [j4]Thibaut Jombart, Anne Cori, Xavier Didelot, Simon Cauchemez, Christophe Fraser, Neil M. Ferguson:
Bayesian Reconstruction of Disease Outbreaks by Combining Epidemiologic and Genomic Data. PLoS Comput. Biol. 10(1) (2014) - 2011
- [j3]Thibaut Jombart, Ismaïl Ahmed:
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data. Bioinform. 27(21): 3070-3071 (2011) - 2010
- [j2]Thibaut Jombart, François Balloux, Stéphane Dray:
adephylo: new tools for investigating the phylogenetic signal in biological traits. Bioinform. 26(15): 1907-1909 (2010) - 2008
- [j1]Thibaut Jombart:
adegenet: a R package for the multivariate analysis of genetic markers. Bioinform. 24(11): 1403-1405 (2008)
Conference and Workshop Papers
- 2021
- [c1]Jeffrey S. Saltz, Alex Sutherland, Thibaut Jombart:
Identifying and Addressing 6 Key Questions when Using Data Driven Scrum. IEEE BigData 2021: 2345-2352
Informal and Other Publications
- 2019
- [i3]Zhian N. Kamvar, Jun Cai, Juliet R. C. Pulliam, Jakob Schumacher, Thibaut Jombart:
Epidemic curves made easy using the R package incidence. F1000Research 8: 139 (2019) - 2018
- [i2]V. P. Nagraj, Nistara Randhawa, Finlay Campbell, Thomas Crellen, Bertrand Sudre, Thibaut Jombart:
epicontacts: Handling, visualisation and analysis of epidemiological contacts. F1000Research 7: 566 (2018) - [i1]Paula Moraga, Ilaria Dorigatti, Zhian N. Kamvar, Pawel Piatkowski, Salla E. Toikkanen, V. P. Nagraj, Christl A. Donnelly, Thibaut Jombart:
epiflows: an R package for risk assessment of travel-related spread of disease. F1000Research 7: 1374 (2018)
Coauthor Index
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