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ORCIDSebastian Funk
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Journal Articles
- 2024
[j15]Kelly Charniga
, Sang Woo Park, Andrei R. Akhmetzhanov, Anne Cori, Jonathan Dushoff, Sebastian Funk, Katelyn M. Gostic, Natalie M. Linton, Adrian Lison, Christopher E. Overton, Juliet R. C. Pulliam, Thomas Ward, Simon Cauchemez, Sam Abbott:
Best practices for estimating and reporting epidemiological delay distributions of infectious diseases. PLoS Comput. Biol. 20(10): 1012520 (2024)- 2023
- [j14]Nikos I. Bosse, Sam Abbott, Anne Cori, Edwin van Leeuwen, Johannes Bracher, Sebastian Funk:
Scoring epidemiological forecasts on transformed scales. PLoS Comput. Biol. 19(8) (2023) - [j13]Daniel Wolffram, Sam Abbott, Matthias an der Heiden, Sebastian Funk, Felix Günther, Davide Hailer, Stefan Heyder, Thomas Hotz, Jan van de Kassteele, Helmut Küchenhoff, Sören Müller-Hansen, Diellë Syliqi, Alexander Ullrich, Maximilian Weigert, Melanie Schienle, Johannes Bracher:
Collaborative nowcasting of COVID-19 hospitalization incidences in Germany. PLoS Comput. Biol. 19(8) (2023) - [j12]James D. Munday, Sam Abbott, Sophie Meakin, Sebastian Funk:
Evaluating the use of social contact data to produce age-specific short-term forecasts of SARS-CoV-2 incidence in England. PLoS Comput. Biol. 19(9) (2023) - [j11]Elisabeth K. Brockhaus, Daniel Wolffram, Tanja Stadler, Michael Osthege, Tanmay Mitra, Jonas M. Littek, Ekaterina A. Krymova, Anna J. Klesen, Jana S. Huisman, Stefan Heyder, Laura Marie Helleckes, Matthias an der Heiden, Sebastian Funk, Sam Abbott, Johannes Bracher:
Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany. PLoS Comput. Biol. 19(11) (2023) - 2022
- [j10]Christopher I. Jarvis, Amy Gimma, Flavio Finger, Tim P. Morris, Jennifer A. Thompson, Olivier Le Polain de Waroux, W. John Edmunds, Sebastian Funk, Thibaut Jombart:
Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics. PLoS Comput. Biol. 18(5) (2022) - [j9]Nikos I. Bosse, Sam Abbott, Johannes Bracher, Habakuk Hain, Billy J. Quilty, Mark Jit, Edwin van Leeuwen, Anne Cori, Sebastian Funk:
Comparing human and model-based forecasts of COVID-19 in Germany and Poland. PLoS Comput. Biol. 18(9): 1010405 (2022) - 2021
- [j8]Joseph Palmer, Katharine Sherratt, Richard Martin-Nielson, Jonnie Bevan, Hamish Gibbs, LSHTM CMMID COVID-19 Working Group, Sebastian Funk, Sam Abbott:
covidregionaldata: Subnational data for COVID-19 epidemiology. J. Open Source Softw. 6(63): 3290 (2021) - [j7]Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey:
Correction: Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput. Biol. 17(12) (2021) - 2020
- [j6]Katelyn M. Gostic, Lauren McGough, Edward B. Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, Rene Niehus, James A. Hay, Pablo M. De Salazar, Joel Hellewell, Sophie Meakin, James D. Munday, Nikos I. Bosse, Katharine Sherratt, Robin N. Thompson, Laura F. White, Jana S. Huisman, Jérémie Scire, Sebastian Bonhoeffer, Tanja Stadler, Jacco Wallinga, Sebastian Funk, Marc Lipsitch, Sarah Cobey:
Practical considerations for measuring the effective reproductive number, Rt. PLoS Comput. Biol. 16(12) (2020) - 2019
- [j5]Sebastian Funk, Anton Camacho, Adam J. Kucharski, Rachel Lowe, Rosalind M. Eggo, W. John Edmunds:
Assessing the performance of real-time epidemic forecasts: A case study of Ebola in the Western Area region of Sierra Leone, 2014-15. PLoS Comput. Biol. 15(2) (2019) - [j4]Akira Endo, Mitsuo Uchida, Adam J. Kucharski, Sebastian Funk:
Fine-scale family structure shapes influenza transmission risk in households: Insights from primary schools in Matsumoto city, 2014/15. PLoS Comput. Biol. 15(12) (2019) - 2017
- [j3]Max S. Y. Lau, Gavin J. Gibson, Hola Adrakey, Amanda McClelland, Steven Riley, Jon Zelner, George Streftaris, Sebastian Funk, C. Jessica E. Metcalf, Benjamin D. Dalziel, Bryan T. Grenfell:
A mechanistic spatio-temporal framework for modelling individual-to-individual transmission - With an application to the 2014-2015 West Africa Ebola outbreak. PLoS Comput. Biol. 13(10) (2017) - 2013
- [j2]John Bryden, Sebastian Funk, Vincent A. A. Jansen:
Word usage mirrors community structure in the online social network Twitter. EPJ Data Sci. 2(1): 3 (2013) - [j1]Sebastian Funk, Hiroshi Nishiura, Hans Heesterbeek, W. John Edmunds, Francesco Checchi:
Identifying Transmission Cycles at the Human-Animal Interface: The Role of Animal Reservoirs in Maintaining Gambiense Human African Trypanosomiasis. PLoS Comput. Biol. 9(1) (2013)
Conference and Workshop Papers
- 2024
- [c2]Sebastian Funk, Christoph Legat, Axel Busboom:
Live Product Line Engineering Using Density-Based Clustering of CAD Models. IEA/AIE 2024: 215-227 - 2010
- [c1]Nicholas Geard, John Bryden, Sebastian Funk, Vincent A. A. Jansen, Seth Bullock:
Stability in Flux - Group Dynamics in Adaptive Networks. ALIFE 2010: 321-322
Informal and Other Publications
- 2021
- [i1]Alexis Robert, Sebastian Funk, Adam J. Kucharski:
o2geosocial: Reconstructing who-infected-whom from routinely collected surveillance data. F1000Research 10: 31 (2021)
Coauthor Index
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