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ORCIDPedro Carmona-Saez
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Journal Articles
- 2023
[j21]Daniel Toro-Domínguez
, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme:
Response to the letter 'testing the effectiveness of MyPROSLE in classifying patients with lupus nephritis'. Briefings Bioinform. 25(1) (2023)- [j20]Jordi Martorell-Marugan, Marco Chierici, Giuseppe Jurman, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez:
Differential diagnosis of systemic lupus erythematosus and Sjögren's syndrome using machine learning and multi-omics data. Comput. Biol. Medicine 152: 106373 (2023) - 2022
- [j19]Daniel Toro-Domínguez, Jordi Martorell-Marugan, Manuel Martínez-Bueno, Raúl López-Domínguez, Elena Carnero-Montoro, Guillermo Barturen, Daniel Goldman, Michelle Petri, Pedro Carmona-Saez, Marta E. Alarcón-Riquelme:
Scoring personalized molecular portraits identify Systemic Lupus Erythematosus subtypes and predict individualized drug responses, symptomatology and disease progression. Briefings Bioinform. 23(5) (2022) - [j18]Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg:
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. Nucleic Acids Res. 50(W1): 710-717 (2022) - 2021
- [j17]Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Jordi Martorell-Marugan, Yolanda Román-Montoya, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez:
A survey of gene expression meta-analysis: methods and applications. Briefings Bioinform. 22(2): 1694-1705 (2021) - [j16]Kevin Troulé, Hugo López-Fernández, Santiago García-Martín, Miguel Reboiro-Jato, Carlos Carretero-Puche, Jordi Martorell-Marugan, Guillermo Martín-Serrano, Pedro Carmona-Saez, Daniel Glez-Peña, Fátima Al-Shahrour, Gonzalo Gómez-López:
DREIMT: a drug repositioning database and prioritization tool for immunomodulation. Bioinform. 37(4): 578-579 (2021) - [j15]Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Daniel Toro-Domínguez, Juan Antonio Villatoro-García, Guillermo Barturen, Adoración Martín-Gómez, Kevin Troulé, Gonzalo Gómez-López, Fátima Al-Shahrour, Víctor González-Rumayor, María Peña-Chilet, Joaquín Dopazo, Julio Sáez-Rodríguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez:
A comprehensive database for integrated analysis of omics data in autoimmune diseases. BMC Bioinform. 22(1): 343 (2021) - 2019
- [j14]Daniel Toro-Domínguez, Jordi Martorell-Marugan, Raúl López-Domínguez, Adrián García-Moreno, Víctor González-Rumayor, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez:
ImaGEO: integrative gene expression meta-analysis from GEO database. Bioinform. 35(5): 880-882 (2019) - [j13]Jordi Martorell-Marugan, Víctor González-Rumayor, Pedro Carmona-Saez:
mCSEA: detecting subtle differentially methylated regions. Bioinform. 35(18): 3257-3262 (2019) - 2017
- [j12]Pedro Carmona-Saez, Nieves Varela, María José Luque, Daniel Toro-Domínguez, Jordi Martorell-Marugan, Marta E. Alarcón-Riquelme, Concepción Marañón:
Metagene projection characterizes GEN2.2 and CAL-1 as relevant human plasmacytoid dendritic cell models. Bioinform. 33(23): 3691-3695 (2017) - [j11]Jordi Martorell-Marugan, Daniel Toro-Domínguez, Marta E. Alarcón-Riquelme, Pedro Carmona-Saez:
MetaGenyo: a web tool for meta-analysis of genetic association studies. BMC Bioinform. 18(1): 563:1-563:6 (2017) - 2010
- [j10]Miguel Vázquez, Rubén Nogales-Cadenas, Javier Arroyo, Pedro Botías, Raul García, José María Carazo, Francisco Tirado, Alberto D. Pascual-Montano, Pedro Carmona-Saez:
MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures. Nucleic Acids Res. 38(Web-Server-Issue): 228-232 (2010) - 2009
- [j9]Miguel Vázquez, Pedro Carmona-Saez, Rubén Nogales-Cadenas, Monica Chagoyen, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
SENT: semantic features in text. Nucleic Acids Res. 37(Web-Server-Issue): 153-159 (2009) - [j8]Rubén Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vázquez, Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information. Nucleic Acids Res. 37(Web-Server-Issue): 317-322 (2009) - 2008
- [j7]Federico Abascal, Pedro Carmona-Saez, José María Carazo, Alberto D. Pascual-Montano:
ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data. Bioinform. 24(9): 1208-1209 (2008) - [j6]Edgardo Mejía-Roa, Pedro Carmona-Saez, Rubén Nogales, Cesar Vicente, Miguel Vázquez, X. Y. Yang, Carlos García, Francisco Tirado, Alberto D. Pascual-Montano:
bioNMF: a web-based tool for nonnegative matrix factorization in biology. Nucleic Acids Res. 36(Web-Server-Issue): 523-528 (2008) - 2006
- [j5]Monica Chagoyen, Pedro Carmona-Saez, Hagit Shatkay, José María Carazo, Alberto D. Pascual-Montano:
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7: 41 (2006) - [j4]Pedro Carmona-Saez, Monica Chagoyen, Andrés Rodríguez Moreno, Oswaldo Trelles, José María Carazo, Alberto D. Pascual-Montano:
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7: 54 (2006) - [j3]Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Francisco Tirado, José María Carazo, Alberto D. Pascual-Montano:
Biclustering of gene expression data by non-smooth non-negative matrix factorization. BMC Bioinform. 7: 78 (2006) - [j2]Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, José María Carazo, Alberto D. Pascual-Montano:
A literature-based similarity metric for biological processes. BMC Bioinform. 7: 363 (2006) - [j1]Alberto D. Pascual-Montano, Pedro Carmona-Saez, Monica Chagoyen, Francisco Tirado, José María Carazo, Roberto D. Pascual-Marqui:
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7: 366 (2006)
Conference and Workshop Papers
- 2011
- [c4]Christian Borgelt, Xiaoyuan Yang, Rubén Nogales-Cadenas, Pedro Carmona-Saez, Alberto D. Pascual-Montano:
Finding closed frequent item sets by intersecting transactions. EDBT 2011: 367-376 - 2010
- [c3]Miguel Vázquez, Rubén Nogales, Pedro Carmona-Saez, Alberto Pascual, Juan Pavón:
Rbbt: A Framework for Fast Bioinformatics Development with Ruby. IWPACBB 2010: 201-208 - 2005
- [c2]Alberto D. Pascual-Montano, Francisco Tirado, Pedro Carmona-Saez, José María Carazo, Roberto D. Pascual-Marqui:
Two-way clustering of gene expression profiles by sparse matrix factorization. CSB Workshops 2005: 103-104 - [c1]A. Fazel Famili, Ziying Liu, Pedro Carmona-Saez, Alaka Mullick:
Knowledge Discovery in the Identification of Differentially Expressed Genes in Tumoricidal Macrophage. IDA 2005: 74-85
Coauthor Index
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