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ORCIDErnesto Aparicio-Puerta
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2020 – today
- 2023
[j10]Ernesto Aparicio-Puerta
, Pascal Hirsch, Georges Pierre Schmartz, Tobias Fehlmann, Verena Keller, Annika Engel, Fabian Kern, Michael Hackenberg, Andreas Keller:
isomiRdb: microRNA expression at isoform resolution. Nucleic Acids Res. 51(D1): 179-185 (2023)- [j9]Ernesto Aparicio-Puerta, Pascal Hirsch, Georges Pierre Schmartz, Fabian Kern, Tobias Fehlmann, Andreas Keller:
miEAA 2023: updates, new functional microRNA sets and improved enrichment visualizations. Nucleic Acids Res. 51(W1): 319-325 (2023) - 2022
- [j8]Bastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov, Sinan U. Umu, Peter J. Chabot, Wenjing Kang, Morteza Aslanzadeh, Marcel Tarbier, Emilio Mármol-Sánchez, Gianvito Urgese, Morten Johansen, Eivind Hovig, Michael Hackenberg, Marc R. Friedländer, Kevin J. Peterson:
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Nucleic Acids Res. 50(D1): 204-210 (2022) - [j7]Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Chantal Scheepbouwer, Adrián García-Moreno, Pedro Carmona-Saez, Bastian Fromm, Michiel Pegtel, Andreas Keller, Juan Antonio Marchal, Michael Hackenberg:
sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms. Nucleic Acids Res. 50(W1): 710-717 (2022) - 2021
- [j6]Fabian Kern, Ernesto Aparicio-Puerta, Yongping Li, Tobias Fehlmann, Tim Kehl, Viktoria Wagner, Kamalika Ray, Nicole Ludwig, Hans-Peter Lenhof, Eckart Meese, Andreas Keller:
miRTargetLink 2.0 - interactive miRNA target gene and target pathway networks. Nucleic Acids Res. 49(Webserver-Issue): 409-416 (2021) - 2020
- [j5]Thomas Desvignes, Phillipe Loher, Karen Eilbeck, Jeffery Ma, Gianvito Urgese, Bastian Fromm, Jason Sydes, Ernesto Aparicio-Puerta, Víctor Barrera, Roderic Espín, Florian Thibord, Xavier Bofill-De Ros, Eric Londin, Aristeidis G. Telonis, Elisa Ficarra, Marc R. Friedländer, John H. Postlethwait, Isidore Rigoutsos, Michael Hackenberg, Ioannis S. Vlachos, Marc K. Halushka, Lorena Pantano:
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Bioinform. 36(3): 698-703 (2020) - [j4]Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta, Morten Johansen, Kjersti Flatmark, Anthony Mathelier, Eivind Hovig, Michael Hackenberg, Marc R. Friedländer, Kevin J. Peterson:
MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Res. 48(Database-Issue): D132-D141 (2020) - [j3]Ernesto Aparicio-Puerta, Cristina Gómez-Martín, Stavros Giannoukakos, José María Medina, Juan Antonio Marchal, Michael Hackenberg:
mirnaQC: a webserver for comparative quality control of miRNA-seq data. Nucleic Acids Res. 48(Webserver-Issue): W262-W267 (2020)
2010 – 2019
- 2019
- [j2]Ernesto Aparicio-Puerta, David Jáspez, Ricardo Lebrón, Danijela Koppers-Lalic, Juan Antonio Marchal, Michael Hackenberg:
liqDB: a small-RNAseq knowledge discovery database for liquid biopsy studies. Nucleic Acids Res. 47(Database-Issue): D113-D120 (2019) - [j1]Ernesto Aparicio-Puerta, Ricardo Lebrón, Antonio Rueda, Cristina Gómez-Martín, Stavros Giannoukakos, David Jáspez, José María Medina, Andreja Zubkovic, Igor Jurak, Bastian Fromm, Juan Antonio Marchal, José L. Oliver, Michael Hackenberg:
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. Nucleic Acids Res. 47(Webserver-Issue): W530-W535 (2019)
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